Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L10
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   0.45 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   1.4  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   5.6  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   7.4  

>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  ITYFNCFIKCVIFMLVVSTFL 112
           IT+FN FI  + F++ V TF+
Sbjct: 126 ITFFNIFITAIAFVICVITFV 146


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 117  HKRKVDTTSINITHLIKQLKYVINSGKIIINFIYYE 10
            H  ++ T    +T +IKQL  V  + ++   F+YYE
Sbjct: 1102 HAFRLYTVEKLVTSIIKQLHSVTTNRRLAQVFMYYE 1137


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 126 CICHK--RKVDTTSINITHLIKQLKYVINSGKIIINFIYYET 7
           CIC K   K+   S+NI   I+ LK +    KI+I F +Y T
Sbjct: 60  CICCKYNSKIKKPSLNIALRIQSLKII----KILI-FQFYST 96


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 105 PFFYDRCIYTSNFLLL 152
           PFFYDR  Y    +LL
Sbjct: 45  PFFYDRICYDYKNILL 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,205
Number of Sequences: 5004
Number of extensions: 9798
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)