Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L10
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271...    25   8.5  

>07_03_0230 +
           15526504-15526673,15526809-15526867,15527135-15527139,
           15528165-15528268,15528362-15528437,15528646-15528704,
           15528803-15528868,15529372-15529455,15529608-15529672,
           15529758-15529840,15529949-15530039,15530142-15530194,
           15530285-15530428,15530562-15530675
          Length = 390

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 100 VHLSFMTDAYIPLIFCCCYGKINSATDEVINN 195
           VH+S    A  PLI  C    I+  T E+++N
Sbjct: 248 VHISLWAIAKAPLIIGCDVRSISRETMEILSN 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,834,708
Number of Sequences: 37544
Number of extensions: 48800
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)