Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L10
(196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68493-6|CAA92792.1| 335|Caenorhabditis elegans Hypothetical pr... 28 0.80
Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical p... 26 3.2
Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical p... 26 3.2
U80028-7|AAG23984.1| 370|Caenorhabditis elegans Serpentine rece... 26 3.2
Z82083-8|CAB04968.2| 374|Caenorhabditis elegans Hypothetical pr... 26 4.3
AL021480-6|CAD90181.1| 374|Caenorhabditis elegans Hypothetical ... 26 4.3
U41037-1|AAA82387.1| 629|Caenorhabditis elegans Gtpase activati... 25 5.6
AF118123-1|AAD13781.1| 629|Caenorhabditis elegans GTPase activa... 25 5.6
Z81453-7|CAB03797.2| 457|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF264764-1|AAQ14296.1| 457|Caenorhabditis elegans sterol reduct... 25 7.4
AF022967-5|AAB69878.1| 537|Caenorhabditis elegans Hypothetical ... 25 9.8
AC006679-8|AAK84470.1| 630|Caenorhabditis elegans Hypothetical ... 25 9.8
>Z68493-6|CAA92792.1| 335|Caenorhabditis elegans Hypothetical
protein C33A12.8 protein.
Length = 335
Score = 28.3 bits (60), Expect = 0.80
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 93 SINITHLIKQLKYVINSGKIIINFIYYETS 4
SI IT ++ + YVIN G I++ ++Y T+
Sbjct: 254 SITITTIVMIIFYVINGGFILMYLLFYGTN 283
>Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical
protein B0024.13b protein.
Length = 342
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 99 CPPFFYDRCIYTSNFLLL 152
CP F ++ CIY S FL++
Sbjct: 278 CPHFLFEICIYLSLFLVI 295
>Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical
protein B0024.13a protein.
Length = 309
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 99 CPPFFYDRCIYTSNFLLL 152
CP F ++ CIY S FL++
Sbjct: 245 CPHFLFEICIYLSLFLVI 262
>U80028-7|AAG23984.1| 370|Caenorhabditis elegans Serpentine
receptor, class w protein124 protein.
Length = 370
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 82 DIYASSVHLSFMTDAYIPLIFCC 150
DI+AS VH+ + Y LIF C
Sbjct: 81 DIFASLVHIQLFLEQYSYLIFKC 103
>Z82083-8|CAB04968.2| 374|Caenorhabditis elegans Hypothetical
protein ZK1010.2 protein.
Length = 374
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 105 VDTTSINITHLIKQLKYVINSGKIIINFIY 16
+D + + H +K+L+Y IN G++ F++
Sbjct: 97 IDEDADDSLHFVKKLEYTINPGELSEIFVF 126
>AL021480-6|CAD90181.1| 374|Caenorhabditis elegans Hypothetical
protein ZK1010.2 protein.
Length = 374
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 105 VDTTSINITHLIKQLKYVINSGKIIINFIY 16
+D + + H +K+L+Y IN G++ F++
Sbjct: 97 IDEDADDSLHFVKKLEYTINPGELSEIFVF 126
>U41037-1|AAA82387.1| 629|Caenorhabditis elegans Gtpase activating
protein familyprotein 1 protein.
Length = 629
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 108 KVDTTSINITHLIKQLKY 55
+V T+S N HLIKQL Y
Sbjct: 277 RVTTSSTNCPHLIKQLLY 294
>AF118123-1|AAD13781.1| 629|Caenorhabditis elegans GTPase
activating protein GAP-1 protein.
Length = 629
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 108 KVDTTSINITHLIKQLKY 55
+V T+S N HLIKQL Y
Sbjct: 277 RVTTSSTNCPHLIKQLLY 294
>Z81453-7|CAB03797.2| 457|Caenorhabditis elegans Hypothetical
protein B0250.9 protein.
Length = 457
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/39 (23%), Positives = 24/39 (61%)
Frame = +2
Query: 44 ELITYFNCFIKCVIFMLVVSTFLL*QMHIYL*FFVVVMV 160
E+ ++F+C + C++++L S + +YL F ++++
Sbjct: 134 EVNSFFSCILTCLLYVLGASAGVYRGDLVYLHFNSIILI 172
>AF264764-1|AAQ14296.1| 457|Caenorhabditis elegans sterol reductase
protein.
Length = 457
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/39 (23%), Positives = 24/39 (61%)
Frame = +2
Query: 44 ELITYFNCFIKCVIFMLVVSTFLL*QMHIYL*FFVVVMV 160
E+ ++F+C + C++++L S + +YL F ++++
Sbjct: 134 EVNSFFSCILTCLLYVLGASAGVYRGDLVYLHFNSIILI 172
>AF022967-5|AAB69878.1| 537|Caenorhabditis elegans Hypothetical
protein C13A2.6 protein.
Length = 537
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 115 MTDAYIPLIFCCCY 156
MTD Y+P++F C Y
Sbjct: 457 MTDFYLPIVFECYY 470
>AC006679-8|AAK84470.1| 630|Caenorhabditis elegans Hypothetical
protein R13A5.9 protein.
Length = 630
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 56 YFNCFIKCVIFML 94
Y CF+ CVIFML
Sbjct: 303 YTLCFVMCVIFML 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,071
Number of Sequences: 27780
Number of extensions: 54192
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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