Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L09
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 146 5e-37
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 146 5e-37
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 143 5e-36
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.21
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 27 0.64
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 1.1
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 25 1.9
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ... 25 2.6
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 3.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 3.4
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 24 4.5
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 4.5
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 4.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 5.9
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 24 5.9
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 24 5.9
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 5.9
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 24 5.9
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 23 7.9
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 23 7.9
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 23 7.9
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.9
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 23 7.9
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 146 bits (355), Expect = 5e-37
Identities = 64/92 (69%), Positives = 79/92 (85%)
Frame = +1
Query: 31 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 210
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 211 NPARGPFHFRAPSKILWKTVRGMIPHKTERGK 306
NP+RG FHFRAPS+I K VRGM+PHKT RG+
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQ 97
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 146 bits (355), Expect = 5e-37
Identities = 64/92 (69%), Positives = 79/92 (85%)
Frame = +1
Query: 31 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 210
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 211 NPARGPFHFRAPSKILWKTVRGMIPHKTERGK 306
NP+RG FHFRAPS+I K VRGM+PHKT RG+
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQ 97
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 143 bits (347), Expect = 5e-36
Identities = 61/91 (67%), Positives = 77/91 (84%)
Frame = +1
Query: 31 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 210
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 211 NPARGPFHFRAPSKILWKTVRGMIPHKTERG 303
NP+RG FHFRAPS+I K VRGM+PHKT RG
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRG 96
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.21
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 58 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 162
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 0.64
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 200 LLRRNDINFNLFLKKLPEMLICSQRT 123
+L NDIN N L KLP ++ ++RT
Sbjct: 37 VLANNDINENTVLLKLPPNILINKRT 62
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 171 FVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQV 58
F +I GNV LF+T+ H QQ L+ + E V
Sbjct: 392 FELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 156 IAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP 49
+A NV+ F++ + V+ ++ Y G++ +QVP P
Sbjct: 1 MASNVDKFSSRFYLNVNKEELKKEYVGKTIQQVPTP 36
>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 80
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 99 QDLSNYCGQSTEQVPAPVDYYGLITKARH 13
QD+S CGQ+ E + + G T ARH
Sbjct: 23 QDMSGGCGQNFEVIIVSPLFEGKSTLARH 51
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 166 NKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 282
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 3.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 103 EGNKVVVVRCEQINISGNFFRNKLKFMSFL 192
E +V++ CE + +FF KLK+ +
Sbjct: 80 ERKVLVLIHCESLQSFDSFFAQKLKYADLI 109
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 24.2 bits (50), Expect = 4.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 194 RRNDINFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRP 66
RR +INF P M + +TTT+FP L S P
Sbjct: 73 RRYEINFGQIYLSRPTMTE-ADGSTTTMFPQEARLRNLTYSSP 114
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 4.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 105 FQQDLSNYCGQSTEQVPAPVDYYGLI 28
+ +D+ CG T P P+D G++
Sbjct: 178 YSKDVPLLCGSLTIDCPTPIDLRGML 203
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 127 RCEQINISGNFFRNKL-KFMSF 189
RC +INI+G+ F N + F SF
Sbjct: 220 RCSKINITGSVFDNFIPSFFSF 241
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 23.8 bits (49), Expect = 5.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 98 CWKETKLWSFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSG 262
CWK + + +++ L F ISS S+ + + + S L +S+LH SSG
Sbjct: 319 CWKNSINYRYMIISLDFSDISSP---SVMN--IHPLYSFSSKSLESSKLHYSSSG 368
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 23.8 bits (49), Expect = 5.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = -1
Query: 152 PEMLICSQRTTTTLFPSSRTLAI------TAASRPSKCPRPSI 42
P L+ S T + P S L + TA+S PS C PS+
Sbjct: 280 PNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSV 322
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 23.8 bits (49), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 245 GALK*KGPRAGLTLHLLRRNDINFNLFLKKL 153
G+ + + R G L RRND FN F L
Sbjct: 640 GSRRQEAQRLGRILRAKRRNDEGFNAFFYSL 670
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 206 LHLLRRNDINFNLFLKKLPEMLICSQRTTT 117
++L+R+ND N +KK+ + LI ++ T
Sbjct: 316 VYLVRKNDTNRIYAMKKISKKLIVRKKEVT 345
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 5.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -1
Query: 245 GALK*KGPRAGLTLHLLRRND---INFNLFLKKLPEMLICSQRTTTTL 111
G + KG L RN+ INF L ++ + ICSQ + T+
Sbjct: 64 GRKRRKGDPLELQSQFEERNETDAINFQLLVRNVVRYAICSQTSHNTI 111
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 142 NISGNFFRNKLKFMSFLRKRCNVN 213
+ISG F RN LKF + N+N
Sbjct: 469 DISGRFQRNSLKFGKTPQGTSNIN 492
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.4 bits (48), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 188 NDINFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRPSKCP 54
NDI K +L + TT+ FPSS + +S+P+ P
Sbjct: 163 NDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSSLPLVSSKPTGTP 207
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 23.4 bits (48), Expect = 7.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 131 QRTTTTLFPSSRTLAITAASRPSKCPRPSITMALLLKPVIFP 6
Q T PS+ T A+T ++P+ PS +++ V P
Sbjct: 316 QSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASP 357
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 302 PRSVLCGIIPLTVFQRIFDGAL 237
P V GI P T+F + FD +L
Sbjct: 163 PSMVREGIDPFTIFAKAFDNSL 184
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 98 CWKETKLWSFVVNRL 142
CW+ WSF+V+ L
Sbjct: 162 CWRSIAWWSFLVDSL 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,575
Number of Sequences: 5004
Number of extensions: 26505
Number of successful extensions: 80
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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