Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L09
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   160   2e-40
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   160   2e-40
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    30   0.29 
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical ...    26   4.7  
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    26   6.2  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    26   6.2  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    26   6.2  
AF003140-8|AAB54169.1|  396|Caenorhabditis elegans Hypothetical ...    25   8.1  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  160 bits (389), Expect = 2e-40
 Identities = 69/95 (72%), Positives = 85/95 (89%)
 Frame = +1

Query: 19  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRK 198
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 199 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERG 303
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRG 96


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  160 bits (389), Expect = 2e-40
 Identities = 69/95 (72%), Positives = 85/95 (89%)
 Frame = +1

Query: 19  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRK 198
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 199 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERG 303
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRG 96


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 132 TTNDHNFVSFQQDLSNYCGQSTEQVPAPVDYYGLITK 22
           T N HNFVS  +D    C  + + +  PVD   L+TK
Sbjct: 396 TKNAHNFVSLSRD-GRICSWNVDNLTQPVDGKELMTK 431


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 182 INFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSIT 39
           + +  F   +P     +  TTT+ FP+S T   T A +PS   +P+ T
Sbjct: 200 VRYATFSPNIPMTTSTTPTTTTSTFPTSTTEKSTTA-QPSTTTKPTTT 246


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 13 MTGFSNKAIVIDGRGHLLGRLAAVI 87
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


>Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical
          protein R08H2.1 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 13 MTGFSNKAIVIDGRGHLLGRLAAVI 87
          M  FS K+I+I G    +GR AAVI
Sbjct: 1  MARFSGKSIIITGSSSGIGRSAAVI 25


>AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical
          protein R05D8.7 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 13 MTGFSNKAIVIDGRGHLLGRLAAVI 87
          M  FSNK ++I G  + +GR  A++
Sbjct: 1  MPRFSNKTVIITGSSNGIGRTTAIL 25


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 109 FLPAGP*QLLRPVDRASARARRLLWPYY 26
           FLP  P ++L  +DRA+      ++P+Y
Sbjct: 223 FLPEAPNEMLAIMDRAATEVVMNMYPFY 250


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 146  MLICSQRTTTTLFPSSRTLAITAASRPSKCPRPS 45
            ++I  +R    L P   T AIT    P+  P P+
Sbjct: 1488 LIILERRPIILLLPDKSTTAITPIHSPANAPTPT 1521


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 113 LFPSSRTLAITAASRPSKCPRPSITMA 33
           + PS+ T + T+++R S  PRP+ T A
Sbjct: 266 IHPSASTTSFTSSARLSTPPRPTTTAA 292


>AF003140-8|AAB54169.1|  396|Caenorhabditis elegans Hypothetical
           protein C44E4.4 protein.
          Length = 396

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = -3

Query: 264 LPEDF*WSSEVKRSTGWVDITSFTKE*HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSN 85
           LP D     ++K   GWV IT+     ++L  + ++     N    +    +S  +D  N
Sbjct: 29  LPRDKFLQEKLKEDDGWVPITTMLNF-NRLASISKDTEKIANAVKNSGSGIISVSED--N 85

Query: 84  YCGQSTEQVPAPVDYYGLITKARH 13
              +  E+ P P +      K +H
Sbjct: 86  QKIRRNEENPVPENSLEYWQKIKH 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,514,447
Number of Sequences: 27780
Number of extensions: 149073
Number of successful extensions: 393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)