Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L08
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 27 0.44
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 0.59
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 1.4
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 1.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 2.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 24 4.1
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 24 4.1
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 23 5.5
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 23 5.5
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 23 9.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 23 9.6
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 23 9.6
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 0.44
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 16 FITKSLLKHLIFKVPLLTSITSEYTNTYSRSVHLHIPNIFTIIMYK 153
F+T+ K F P + S+ +YT+ Y S+ P++ T + K
Sbjct: 647 FLTEEERKRNSFNAPTVFSLAEDYTSFYPSSLPSLFPDLVTRCIQK 692
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 0.59
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 61 LLTSITSEYTNTYSRSVHLHIPNIFTII 144
LL +TSEYT+ YS IP FTII
Sbjct: 328 LLIGVTSEYTSVYSDK----IPPTFTII 351
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 1.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 7 GFFFITKSLLKHLIFKVPLLTSITSEYTNTYSRSVHLHIPNIFTIIMYKVTG 162
GFF I + L +L+ + ++ NT++RS+ +F+ IM+K G
Sbjct: 408 GFFVIFQGCLNYLVDTFTKFAA-SAIAANTFTRSIFAGTFPLFSEIMFKKLG 458
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 110 YISIFQIYLLLSCTKSLETL--NYKLFDNKL 196
+ISIF +Y+L S TKS+ + +Y N+L
Sbjct: 206 FISIFLLYVLFSSTKSIADIRQSYLARQNRL 236
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 24.6 bits (51), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 152 KSLETLNYKLFDNKLFKWFAYKN 220
++L T+NY+ D KL W A N
Sbjct: 1465 RALSTINYREEDEKLNVWMALLN 1487
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 23.8 bits (49), Expect = 4.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 80 VSTLTHTRGLYISIFQIYLLLSCTKSLETLNYKLFDNKLFKW 205
VS + L I I LL SC K L+T N+ + KW
Sbjct: 1231 VSNILSNECLPIKESFIVLLGSCIKQLKTENFLEYKVTFAKW 1272
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 23.8 bits (49), Expect = 4.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 111 TSPYSKYIYYYHV 149
+ PYSKY+Y Y V
Sbjct: 24 SEPYSKYVYRYFV 36
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 23.4 bits (48), Expect = 5.5
Identities = 10/45 (22%), Positives = 20/45 (44%)
Frame = +2
Query: 113 ISIFQIYLLLSCTKSLETLNYKLFDNKLFKWFAYKN*NAKNYEIL 247
+ ++++Y + L K ++K KW K K +EI+
Sbjct: 603 VELYRVYAGIDVAIGTLQLGLKRMESKAGKWECIKEIEVKRFEIV 647
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 23.4 bits (48), Expect = 5.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 92 THTRGLYISIFQIYLLLSCTKSLETLNYKL-FDNKL 196
T R LY+ FQI L L C + L KL FD ++
Sbjct: 77 TAGRSLYLQAFQIILQLQC----QALTTKLGFDQRI 108
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 59 PYLQVSPVSTLTHTRGLYISIFQIYLLLSCTKSLETL 169
PY + S+L + S+ IY+L C+K E +
Sbjct: 15 PYSILPSYSSLQWITNAWCSLPSIYILCHCSKHQEEI 51
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = +2
Query: 110 YISIFQIYLLLSCTKSLETLNYKLFDNKLFKWFAY 214
+I +F + + SL L+D L +W A+
Sbjct: 38 FILVFTLLSITGIYSSLVAYQQSLYDQSLARWSAW 72
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 22.6 bits (46), Expect = 9.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 141 NSKYIWNMEMYRPR 100
N +++ NME YRP+
Sbjct: 190 NERHLLNMEYYRPK 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,892
Number of Sequences: 5004
Number of extensions: 19144
Number of successful extensions: 53
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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