Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L08
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0238 + 14665813-14668798,14669088-14669125                       27   2.1  
05_05_0147 + 22715144-22715444,22716245-22716407,22716484-227165...    25   8.3  
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884...    25   8.3  

>08_02_0238 + 14665813-14668798,14669088-14669125
          Length = 1007

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 46  IFKVPLLTSIT---SEYTNTYSRSVHLHIPNIFTIIMYKVTGNFELQI 180
           IF +  LT ++   +++TNT    +   +PNI T+I+ +  GNF+ +I
Sbjct: 353 IFNISSLTYLSLAVNDFTNTLPFGIGYTLPNIQTLILQQ--GNFQGKI 398


>05_05_0147 +
           22715144-22715444,22716245-22716407,22716484-22716532,
           22716626-22716739,22716812-22717234,22717307-22717693,
           22717777-22717872,22717978-22718093,22718137-22718272,
           22718392-22718480,22718586-22718736,22719057-22719185,
           22719276-22719354,22719435-22719544
          Length = 780

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 171 FKVSSDFVHDNSKYIWNMEMY 109
           F  + DF+H+N K IW + ++
Sbjct: 254 FNKTVDFIHENWKRIWVLSLW 274


>01_05_0290 -
           20487105-20487113,20487171-20487213,20488336-20488412,
           20489096-20489163,20489266-20489456,20490687-20490798,
           20490892-20490943,20491984-20492076,20493065-20493211,
           20493381-20493410,20493764-20493862,20495188-20495322,
           20495420-20495498,20495989-20496064,20496345-20496423,
           20496513-20496547,20497185-20497259,20497405-20497804
          Length = 599

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 73  ITSEYTNTYSRSVHLHIPNIFTIIM 147
           IT  +   Y+  ++LHIP+ F I++
Sbjct: 330 ITGAHRKAYTSVLYLHIPDNFRIVL 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,739,704
Number of Sequences: 37544
Number of extensions: 90890
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)