Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L08
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   1.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   2.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   2.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   2.6  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   2.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   6.1  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 106 SVHLHIPNIFTII 144
           +VH HI NIF II
Sbjct: 54  NVHNHIQNIFKII 66


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 106 SVHLHIPNIFTII 144
           +VH HI NIF II
Sbjct: 37  NVHNHIQNIFKII 49


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 153 SHWKL*ITNYLIINYSNGLHTKIKMQKI 236
           S W +  T YL+IN+S G+   +K+  +
Sbjct: 285 SLWFMAWTPYLVINFS-GIFNLVKISPL 311


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 YLLLSCTKSLETLNYKLFD 187
           YL++ C+ +LET   KL +
Sbjct: 149 YLIIECSLNLETYLDKLIE 167


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 153 SHWKL*ITNYLIINYSNGLHTKIKMQKI 236
           S W +  T YL+IN+S G+   +K+  +
Sbjct: 35  SLWFMAWTPYLVINFS-GIFNLVKISPL 61


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 71  VSPVSTLTHTRGLY 112
           VSPV  LT   GLY
Sbjct: 37  VSPVVELTENNGLY 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 120 YSKYIYYYHVQSH 158
           YS  + Y+H+Q H
Sbjct: 200 YSMLLVYFHLQRH 212


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  ILAVCTSPYSKYIYYYHVQSH 158
           I  +  SP ++ +YY  + SH
Sbjct: 251 IFGMALSPLTQNLYYSALSSH 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,531
Number of Sequences: 438
Number of extensions: 1539
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)