Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L07
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 76 7e-16
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 0.25
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 0.58
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 1.0
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 25 1.3
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 24 2.3
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 2.3
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 24 3.1
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 23 5.4
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 23 7.1
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 23 7.1
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 22 9.4
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 22 9.4
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 22 9.4
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 22 9.4
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 22 9.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 22 9.4
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 75.8 bits (178), Expect = 7e-16
Identities = 30/42 (71%), Positives = 38/42 (90%)
Frame = +3
Query: 111 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRFGKLCIEVTP 236
++ LTRIAIV+ D+C+PK+CRQEC++SCPVVR GKLCIEV P
Sbjct: 2 SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNP 43
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 27.5 bits (58), Expect = 0.25
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -1
Query: 152 TIRIYYS-DTGKFICFLIISFSGHHC 78
T+++YY+ D+G ++C ++ F+G C
Sbjct: 589 TVKLYYAFDSGDYLCLVMDYFNGGDC 614
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 0.58
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 36 ANVGKVSPTFALLSAVMSRKRDNEETDKLTRIAI 137
AN K+ + L A+ S + D+E DKL +++I
Sbjct: 105 ANSSKIYESMIALKALNSSQNDSEVKDKLEKLSI 138
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 228 LRCTVCQNAQLGNSSCIPVDIFLVCND 148
LRCT+C + G + C +F ND
Sbjct: 1751 LRCTLCHEIETGIADCCLDAVFNFIND 1777
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 68 SERWRYFAYVRVSFYQSLVP 9
+ER YF+Y RV+ Y+S P
Sbjct: 50 TERSDYFSYYRVNLYRSSCP 69
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 87 SRKRDNEETDKLTRIAIVNADRCKPKRCRQECKK 188
SR+ ETD+ R + + +R +CRQ K+
Sbjct: 462 SRRNSKNETDEEKRKSFLERNRQAALKCRQRKKQ 495
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 36 ANVGKVSPTFALLSAVMSRKR 98
+NVG +S T AL+SAV KR
Sbjct: 545 SNVGVLSNTAALISAVSKGKR 565
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +3
Query: 99 DNEETDKLTRIAIVNADRCKPKRCRQE 179
+NE+ +K + N D C+ + C++E
Sbjct: 296 NNEQEEKQDKKQSTNRDLCRKESCKKE 322
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 228 LRCTVCQNAQLGNSSCIPVDIF 163
L CT+ +A LG SC+ +D F
Sbjct: 119 LACTLITHAHLGFESCV-IDYF 139
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 18 GLVKGHANVGKVSPTFALLSAVMSRKRDN 104
G++ +GK T +L++ ++ +KR N
Sbjct: 438 GILADEMGLGKTIQTISLITHLIEKKRQN 466
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 32 TRERRQSIANVRSFISSDVP 91
T+ +RQ I V + ++SDVP
Sbjct: 1090 TKRKRQPIRRVTTNLTSDVP 1109
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 232 VTSMHSLPKRTTGQLFLH 179
+ S SLP RT+G F H
Sbjct: 664 IPSSASLPMRTSGNRFCH 681
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 128 YRYSKCGSLQTKKMSTGMQEELPSCAFWQ 214
YR S C S K +++ + E L W+
Sbjct: 507 YRMSHCSSNSNKVLASEISESLRRDLLWE 535
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 206 THNWATLLAFLSTSFWFATI 147
T W + F+S SFWF ++
Sbjct: 45 TSYWFSSGPFISLSFWFLSL 64
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 22.2 bits (45), Expect = 9.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 42 VGKVSPTFALLSAVMSRKRDNEETDKLTRIAIV 140
V K+ T A+ S KR EETD+ + IAI+
Sbjct: 251 VEKLLKTATKYEALNSLKRIMEETDEGSYIAIM 283
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 102 YLVFGTSLLIKERTLAILCLRSRVLLPVPR 13
Y++FG LL AI C VL+ PR
Sbjct: 68 YMLFGICLLGSLACYAIACFMFPVLVLKPR 97
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 22.2 bits (45), Expect = 9.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 97 EIMRKQINLPVSL**MRIVANQKDVDRNARRVAQLC 204
EI RK+I + I NQ + NAR+ +QLC
Sbjct: 629 EIARKEIPRVYKI----IQQNQYNRSTNARKTSQLC 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,375
Number of Sequences: 5004
Number of extensions: 17399
Number of successful extensions: 46
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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