Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L07
(239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 81 2e-16
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 59 6e-10
08_02_0101 + 12374476-12376683 27 2.1
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 27 2.1
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 27 2.8
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 26 4.9
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 25 6.5
08_01_0017 + 132109-132924 25 8.5
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 25 8.5
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 80.6 bits (190), Expect = 2e-16
Identities = 33/41 (80%), Positives = 39/41 (95%)
Frame = +3
Query: 114 DKLTRIAIVNADRCKPKRCRQECKKSCPVVRFGKLCIEVTP 236
++LTRIAIV+ D+CKPK+CRQECKKSCPVV+ GKLCIEVTP
Sbjct: 3 ERLTRIAIVSEDKCKPKKCRQECKKSCPVVKTGKLCIEVTP 43
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 58.8 bits (136), Expect = 6e-10
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +3
Query: 102 NEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRFGKLCIEVTPN 239
+ + + +RIA+V DRC+P +C Q+C+K CPV G+ CIEVTP+
Sbjct: 3 SSSSGRSSRIAVVTEDRCRPSKCGQQCRKRCPVNATGRQCIEVTPS 48
>08_02_0101 + 12374476-12376683
Length = 735
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 LIRHEGLVKGHANVGKVSPTFALLSAVMSRK-RDNEET 113
L+ + L++G+AN+G VS F+ ++ + + NE++
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDS 529
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 3 LIRHEGLVKGHANVGKVSPTFALLSAVMSRKRDNEETDKLTRIAI 137
L HE L VG ++P L SAV+SR + +KL ++A+
Sbjct: 380 LTAHEVLRHPWVQVGGLAPDKPLDSAVLSRMKQFSAMNKLKKMAL 424
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 12 HEGLVKGHANVGKVSPTFALLSAVMSRKRDNEETDKL 122
H G++ +GK T A LSAV+ +DN+ D+L
Sbjct: 151 HGGVLGDDMGLGKTIQTIAFLSAVIG--KDNDHGDQL 185
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 3 LIRHEGLVKGHANVGKVSPTFALLSAVMSRKRDNEETDKLTRIAI 137
L HE L V V+P L SAV+SR + +KL ++A+
Sbjct: 360 LTAHEALCHPWVCVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMAL 404
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 131 RYSKCGSLQTKKMSTGMQEELPSCAFW 211
R +C + KKM TG + E P C ++
Sbjct: 271 RCLECNEHRPKKMLTGGEWECPQCVYY 297
>08_01_0017 + 132109-132924
Length = 271
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +2
Query: 125 PYRYSKCGSLQTKKMSTGMQEELPSC 202
PY YS C ++ + + + PSC
Sbjct: 36 PYSYSSCSNMSSSSSAAAAAWQWPSC 61
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 30 GHANVGKVSPTFALLSAVMSRKRDNEETDKLTR-IAIVNAD 149
GHAN+G PT ++AV + EE + +A+V D
Sbjct: 816 GHANMGCSGPTLLQVTAVFAPHASPEELPSGAKSVAVVAID 856
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,598,598
Number of Sequences: 37544
Number of extensions: 108723
Number of successful extensions: 335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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