Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L07
(239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 60 3e-10
U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical pr... 27 1.3
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 2.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 2.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 2.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 2.3
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 27 2.3
Z54281-7|CAA91050.2| 202|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 26 3.1
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 26 3.1
Z99273-3|CAB16478.1| 392|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z74041-6|CAA98517.2| 337|Caenorhabditis elegans Hypothetical pr... 25 5.4
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 25 7.2
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 25 9.5
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 25 9.5
L23649-3|AAA27909.2| 601|Caenorhabditis elegans Tyrosinase prot... 25 9.5
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 59.7 bits (138), Expect = 3e-10
Identities = 31/52 (59%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +3
Query: 84 MSRKRD---NEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRFGKLCIEV 230
MSRK N ETD RIAIV DRCKPK C CK++CPV R GK CI V
Sbjct: 1 MSRKGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVV 52
>U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical
protein C07G1.2 protein.
Length = 635
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 228 LRCTVCQNAQLGNSSCIPVDIFLVCN 151
+RC+ CQ A G+ SCI D +CN
Sbjct: 549 IRCSHCQQAACGDGSCIRFD--QLCN 572
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 153 CKPKRCRQECKKSCPVVRFGKLC 221
CKP R + C + CP+ +G C
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNC 470
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 153 CKPKRCRQECKKSCPVVRFGKLC 221
CKP R + C + CP+ +G C
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNC 470
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 153 CKPKRCRQECKKSCPVVRFGKLC 221
CKP R + C + CP+ +G C
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNC 470
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 153 CKPKRCRQECKKSCPVVRFGKLC 221
CKP R + C + CP+ +G C
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNC 470
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 42 VGKVSPTFALLSAVMSRKRDNEETDKLTRIAIVNADRCK 158
VG V TFA+L+ ++ + K+T + + + CK
Sbjct: 13 VGSVVSTFAVLTVIIGLPLMHNHVQKVTTLMLTEVELCK 51
>Z54281-7|CAA91050.2| 202|Caenorhabditis elegans Hypothetical
protein F46C5.2 protein.
Length = 202
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +3
Query: 60 TFALLSAVMSRKRDNEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRFGKLCIEVTP 236
T +L+ V + + K ++ A CK C K CPV ++ C+ +P
Sbjct: 31 TESLVECVQCVQLWRSASAKEGKVCTSGATTCKGNACFMRQCKHCPVYQYMSGCVNFSP 89
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 153 CKPKRCRQECKKSCPVVRFGKLC 221
CKP +CK C RFG C
Sbjct: 1317 CKPGHSGSDCKSGCVQGRFGPDC 1339
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 132 AIVNADRCKPKRCRQECKKSCPVVRFGKLC 221
++ + C+P ++C + CP RFG+ C
Sbjct: 999 SVTGSCECRPGWRGKKCDRPCPDGRFGEGC 1028
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 174 QECKKSCPVVRFGKLC 221
Q C+K CP FGK C
Sbjct: 702 QSCEKPCPHFTFGKNC 717
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 150 RCKPKRCRQECKKSCPVVRFGKLCIE 227
RC P C + CP RFG C E
Sbjct: 1402 RCLPGFTGMTCNQVCPEGRFGAGCKE 1427
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 153 CKPKRCRQECKKSCPVVRFGKLC 221
CKP +CK C RFG C
Sbjct: 1317 CKPGHSGSDCKSGCVQGRFGPDC 1339
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 132 AIVNADRCKPKRCRQECKKSCPVVRFGKLC 221
++ + C+P ++C + CP RFG+ C
Sbjct: 999 SVTGSCECRPGWRGKKCDRPCPDGRFGEGC 1028
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 174 QECKKSCPVVRFGKLC 221
Q C+K CP FGK C
Sbjct: 702 QSCEKPCPHFTFGKNC 717
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 150 RCKPKRCRQECKKSCPVVRFGKLCIE 227
RC P C + CP RFG C E
Sbjct: 1402 RCLPGFTGMTCNQVCPEGRFGAGCKE 1427
>Z99273-3|CAB16478.1| 392|Caenorhabditis elegans Hypothetical
protein Y45F10C.3 protein.
Length = 392
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 145 RIVANQKDVDRNARRVAQLCVLANC 219
R + +KD+ RN R + C+L NC
Sbjct: 16 RKMIEKKDLMRNNRTALRACILFNC 40
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 2 INSARGTGKRTRERRQSIANVRSFI 76
+ SARG KRT +R Q +AN+R +
Sbjct: 311 VMSARG--KRTTDRNQHVANLRKLL 333
>Z74041-6|CAA98517.2| 337|Caenorhabditis elegans Hypothetical
protein T03F7.3 protein.
Length = 337
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 230 YFDAQFAKTHNWATLLAFLSTSFWFATIRIYYSDTGKFICFLIISFSG 87
YF A + ++A + F+ I YY+ + CFLI+S G
Sbjct: 246 YFIAVCVQVFIPFVIMAVPVNYYSFSIITDYYNQSANNFCFLIMSLHG 293
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 231 LLRCTVCQNAQLGNSSCIPVDIFLVCNDP 145
+L C+ C +AQ + C P+ I NDP
Sbjct: 885 ILNCSSCDSAQTLSIHCFPIKI--EANDP 911
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 185 LAFLSTSFWFATIRIYYSDTGKFICF 108
LA+L + F T R YY D G CF
Sbjct: 28 LAYLQETTKFVTEREYYEDFGYGECF 53
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 185 LAFLSTSFWFATIRIYYSDTGKFICF 108
LA+L + F T R YY D G CF
Sbjct: 28 LAYLQETTKFVTEREYYEDFGYGECF 53
>L23649-3|AAA27909.2| 601|Caenorhabditis elegans Tyrosinase protein
1 protein.
Length = 601
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 122 YPYRYSK--CGSLQTKKMSTGMQEELPSCAFWQ 214
Y RY + CG Q+ + G + SCA+W+
Sbjct: 502 YMNRYCRKSCGLCQSNDNNRGCHDRHISCAYWR 534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,811,682
Number of Sequences: 27780
Number of extensions: 103274
Number of successful extensions: 397
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -