Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L06
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 71 2e-14
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 71 2e-14
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 45 1e-06
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 31 0.027
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 3.2
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 23 4.2
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 4.2
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 23 5.5
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 23 5.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 23 5.5
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 23 5.5
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 7.3
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 22 9.6
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 22 9.6
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 22 9.6
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 22 9.6
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 22 9.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 71.3 bits (167), Expect = 2e-14
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +1
Query: 97 ECISVHVGQAGVQIGNACWELYCLEHGIQPDG 192
E ISVHVGQAGVQIGNACWELYCLEHGI PDG
Sbjct: 3 EVISVHVGQAGVQIGNACWELYCLEHGIGPDG 34
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 70.9 bits (166), Expect = 2e-14
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +1
Query: 97 ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQISTD 207
E IS+HVGQAG QIGNACWELYCLEHGIQP+G ++ +
Sbjct: 3 EIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPE 39
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 45.2 bits (102), Expect = 1e-06
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 97 ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQIST 204
E I++ GQ G QIG+ W+ CLEHGI PDG + +
Sbjct: 4 EIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLES 39
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.027
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 97 ECISVHVGQAGVQIGNACWELYCLEHGIQPDG 192
E + + GQ G Q+G A W EHG+ G
Sbjct: 3 EIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG 34
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 180 DAVLKAIQLPAGISDLDSGLANV 112
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +1
Query: 88 KCVECISVHVGQAGVQIGNACWELYCLEHGIQ 183
+CV C + + G+ + C++ C E G++
Sbjct: 24 ECVRCFNSQDEEGGIDLCLTCFQSGCGETGLK 55
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 99 VHLCTRWPSRSPDRK 143
+H WPSR+P RK
Sbjct: 3 LHDAYHWPSRTPSRK 17
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 204 SRNLTIRLDAVL--KAIQLPAGISDLDSGLANVYR 106
S NL +++ K +QLP +DLD ++YR
Sbjct: 534 SINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYR 568
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 77 NSIQNALSASLYTLAKPESRSEMPAGSCIA 166
N +N A+ +T+ KP+S + G C A
Sbjct: 114 NPCRNCGVANRFTIIKPKSDARFSQGLCTA 143
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 180 DAVLKAIQLPAGISDLDS 127
DAV KAIQL SDL S
Sbjct: 241 DAVSKAIQLVKSTSDLGS 258
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 76 KLNTKCVECISVHVGQAGVQI 138
KLN++C+E + VG+ G ++
Sbjct: 448 KLNSQCLEMVYSFVGERGERL 468
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 189 IRLDAVLKAIQLPAGISDLDSGLANVYRDALNAFC 85
+ +DAV + + A +D G VYR LNA+C
Sbjct: 193 VTVDAVTEKVVTAA----IDDGDDLVYRQRLNAWC 223
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 135 LDSGLANVYRDALNAFCIEFXERK 64
+D G+A YRD I + ERK
Sbjct: 153 VDFGMAKYYRDPKTKQHIPYSERK 176
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 170 SRQYSSQQAFPIWTPAWPTCTEMHSTH 90
SRQY + I + W + MH+ H
Sbjct: 553 SRQYGDNLKYEIASLRWIYISHMHADH 579
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 195 LTIRLDAVLKAIQLPAGISDLDSGL 121
+T+R D+V++ + AG++D+ S L
Sbjct: 338 ITVRRDSVIQIDESSAGLTDVISEL 362
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 199 KSDHQVGCRAQGNTAPSRHFRSGLRLG 119
K ++ + G+TAP+ F+SG G
Sbjct: 975 KEENTPMAKDAGDTAPASGFKSGFSFG 1001
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 28 AERRLINLFYLHFTFXKLNTKCVECISVHVGQAGVQIGN 144
AE RLI +H+ + TK V S G V +GN
Sbjct: 363 AEGRLILADAVHYVSSQYKTKAVIEASTLTGAMLVALGN 401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,670
Number of Sequences: 5004
Number of extensions: 11562
Number of successful extensions: 43
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -