Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L04
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    24   3.2  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.2  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    23   4.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    23   5.6  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    23   5.6  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    22   9.7  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -3

Query: 72  CTCVCLCVYECTNKYVPRAELI 7
           C   C C  EC N+ V R   +
Sbjct: 307 CNSFCSCSMECPNRVVQRGRTL 328


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 119

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +3

Query: 27 HIYSYIHIH--TDTHTYIY 77
          H+Y Y HIH  T + +Y+Y
Sbjct: 36 HLYHYEHIHLFTSSQSYMY 54


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 101 YVASASLWVYVRVCVCVYMNVRINMCLVPN 12
           Y+ + ++W+Y+     V  N  +N+ ++PN
Sbjct: 314 YINTNNVWLYLPAVKRVVENRELNLDIMPN 343


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 116 FSYVFYVASASLWVYVRV 63
           FSY+FY+    + VY+ V
Sbjct: 258 FSYIFYLIGVPITVYLAV 275


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 53  HRHTHVHIPIEMHSQHK 103
           HRHT +   ++ H QH+
Sbjct: 232 HRHTDIVNDVQFHPQHE 248


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 12  IRHEAHIYSYIHIHTDTHTYIY 77
           +RH  HI +   + TDT+  +Y
Sbjct: 109 VRHWEHIDALSELATDTYVRVY 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,596
Number of Sequences: 5004
Number of extensions: 7816
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)