Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L04
(125 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 29 0.69
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434... 27 2.8
10_01_0039 + 447573-448911,451247-451296,451322-451423 26 3.7
04_04_1648 - 35036538-35037155 26 3.7
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 26 3.7
01_06_0520 + 29997024-29997233,29997346-29997421,29998804-29998946 26 4.9
05_04_0062 + 17607290-17608852 25 6.5
03_02_0822 + 11530250-11530442,11530728-11531129,11531430-115318... 25 8.6
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597... 25 8.6
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483... 25 8.6
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 0.69
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 41 HSYTHRHTHVHIPIEMHSQHKIH 109
HS++H H+H H + H H H
Sbjct: 504 HSHSHSHSHSHSHVHGHEDHHNH 526
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 11 NSARGTYLFVHSYTHRHTHVHIPIEMHSQHKIH 109
NS + + H + H H H H E H Q H
Sbjct: 571 NSCKENHSHCHGHDHHHHHHHDHSEHHQQSGDH 603
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 41 HSYTHRHTHVHIPIEMHSQHKIH 109
HS++H H+H H +H H
Sbjct: 502 HSHSHSHSHSHSHSHVHGHEDHH 524
>01_02_0010 +
10142450-10142570,10142811-10142965,10143295-10143477,
10143691-10144043,10144220-10144388
Length = 326
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 17 ARGTYLFVHSYTHRHTHVHIPIEMHSQHKIHTK 115
ARG YL + S HR V + E+ Q+ I T+
Sbjct: 239 ARGRYLCIGSVLHRSEFVRLLRELFPQYPITTR 271
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 26.2 bits (55), Expect = 3.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 53 HRHTHVHIPIEMHSQHKIH 109
HR H ++P+ MH + +H
Sbjct: 292 HRRVHAYLPLSMHGRRWLH 310
>04_04_1648 - 35036538-35037155
Length = 205
Score = 26.2 bits (55), Expect = 3.7
Identities = 7/18 (38%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 108 CILC-CECISMGICTCVC 58
C+ C C+C++ G+ +C+C
Sbjct: 10 CLCCPCKCLACGLFSCLC 27
>04_04_0605 +
26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 113 SYVFYVASASLWVYVRVCVCVYMNVRINMCLVP 15
S + VA A+L Y R+ Y +RIN CL P
Sbjct: 897 SSAYKVAKAALNAYTRILAKKYPTLRIN-CLTP 928
>01_06_0520 +
29997024-29997233,29997346-29997421,29998804-29998946
Length = 142
Score = 25.8 bits (54), Expect = 4.9
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = -3
Query: 93 ECISMGICTCVCLCVY 46
+C S+ +CT C+C++
Sbjct: 12 DCFSLALCTNACVCIH 27
>05_04_0062 + 17607290-17608852
Length = 520
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 81 MGICTCVCLCVYECTNKYVPRAELI 7
+G+C+C+ C Y+C + +E I
Sbjct: 242 VGLCSCIYSCFYKCNVVVITDSEEI 266
>03_02_0822 +
11530250-11530442,11530728-11531129,11531430-11531878,
11533568-11533744
Length = 406
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -3
Query: 105 ILCCECISMGICTCVCLCVYECTNKYVPRAELI 7
IL C + C C C C+N+ V R +
Sbjct: 268 ILVCRKTMIYECNDSCACTINCSNRVVQRGSYL 300
>02_05_0399 +
28658667-28658922,28659287-28659443,28659527-28659746,
28660549-28660602,28660671-28660750,28661269-28661351,
28661385-28661546,28661667-28662071,28662151-28662503,
28662590-28662835,28663158-28663481,28664110-28664154
Length = 794
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 18 HEAHIYSYIHIHTDTHTYIY 77
HEA Y Y +IH D IY
Sbjct: 535 HEAEYYPYCNIHIDPSPEIY 554
>01_02_0011 +
10146944-10147067,10147871-10148025,10148137-10148319,
10149448-10149800,10150036-10150207
Length = 328
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 17 ARGTYLFVHSYTHRHTHVHIPIEMHSQHKIHTK 115
ARG YL + S HR V + E+ Q+ I ++
Sbjct: 240 ARGRYLCIGSVLHRSEFVRLLRELFPQYPITSR 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,312
Number of Sequences: 37544
Number of extensions: 44327
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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