Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L04
         (125 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    29   0.005
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.26 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.34 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   5.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          19   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   5.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   7.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    19   7.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   7.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   7.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    18   9.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.6  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 0.005
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 23  GTYLFVHSYTHRHTHVHIPIEMHSQHKI 106
           GT  F++ Y H+   V +P+++H Q+ I
Sbjct: 663 GTSYFLNDYKHKDVDVTLPLDLHIQNAI 690


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 41  HSYTHRHTHVHIPIEMHSQH 100
           H+  H H+H+H     H  H
Sbjct: 417 HTMGHGHSHIHATPHHHHSH 436



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +2

Query: 53  HRHTHVHIPIEMHSQHKIHT 112
           H H+H   P   HS    H+
Sbjct: 432 HHHSHAATPHHQHSTPLAHS 451


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 7/23 (30%), Positives = 7/23 (30%)
 Frame = -3

Query: 108 CILCCECISMGICTCVCLCVYEC 40
           C   C C     C C   C   C
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGC 765


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 72  CTCVCLCVYECTNKYVPRAELIQ 4
           C   C C  +C N+ V R   +Q
Sbjct: 474 CNKRCNCDIDCINRVVQRGTKMQ 496


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 97  LRVHLYGYMYVCVSVCI 47
           LR HL G + V VSV +
Sbjct: 129 LRTHLRGTLTVNVSVLL 145


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 77  PIEMHSQHKIHT 112
           P+  HS + IHT
Sbjct: 75  PVSSHSSNGIHT 86


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 74  IPIEMHSQHKIHTKSAL 124
           +PIE+  Q + HT + +
Sbjct: 783 VPIELQIQKQSHTPNGI 799


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 42  IHIHTDTHTYIYP*RC 89
           + +HT THT   P  C
Sbjct: 219 LKVHTRTHTGEKPYTC 234



 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 42  IHIHTDTHTYIYP*RCT 92
           +H H   HT   P +CT
Sbjct: 163 LHRHMRIHTGERPHKCT 179


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -1

Query: 98  VASASLWVYVRVCVC 54
           V+ + +W   R C+C
Sbjct: 63  VSGSKIWQMERSCMC 77


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 97  LRVHLYGYMYVCVS 56
           LR+ + G  Y C+S
Sbjct: 315 LRIKILGDCYYCIS 328


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = +2

Query: 41  HSYTHRHTHVHIPIEMHSQHKIHT 112
           H +     H H     H QH  HT
Sbjct: 319 HQHHPSQYHPHRGSSPHHQHGNHT 342


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  P*RCTRNIKYIRKVHY 125
           P + T  +KY+RKV +
Sbjct: 505 PTKGTELLKYLRKVDF 520


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 54 CVYECTNKYVPRAEL 10
          C Y C NK +  + L
Sbjct: 22 CSYSCVNKSMLNSHL 36


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 68   VHIPIEMHSQHKIHTKS 118
            VH+  E+  +++IH K+
Sbjct: 1003 VHVTPELIYEYQIHPKT 1019


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,561
Number of Sequences: 438
Number of extensions: 573
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)