Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L03
(211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 91 2e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 5e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 46 5e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 1e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 40 3e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 40 6e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 1e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 1e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 38 2e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 36 6e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 36 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 35 0.002
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 35 0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.004
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.004
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.005
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 32 0.009
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.012
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.016
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 29 0.063
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.084
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.084
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.11
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 23 5.5
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 23 5.5
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 23 7.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 22 9.6
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 22 9.6
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 22 9.6
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 22 9.6
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 22 9.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 91.1 bits (216), Expect = 2e-20
Identities = 43/59 (72%), Positives = 48/59 (81%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
GKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ ++FG SS +RNTCV
Sbjct: 171 GKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCV 229
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 59.7 bits (138), Expect = 5e-11
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTC 208
GKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R C
Sbjct: 467 GKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACC 524
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.4 bits (125), Expect = 2e-09
Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVASEF 178
GKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ ++F
Sbjct: 298 GKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKF 348
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 46.4 bits (105), Expect = 5e-07
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVASEFGNS 187
GKTLAY+LP + + P R G A+++APTREL QQI VA++ N+
Sbjct: 190 GKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNN 242
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.5 bits (93), Expect = 1e-05
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 175
GKTLAY+LP + + G G AL++APTRELA QI V E
Sbjct: 50 GKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 40.3 bits (90), Expect = 3e-05
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 35 GKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
GKT A+ LP I + NN P A+VLAPTRELA QI + G S VR+ +
Sbjct: 95 GKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVI 148
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.5 bits (88), Expect = 6e-05
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 166
GKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 63 GKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 38.3 bits (85), Expect = 1e-04
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE--FGNS 187
C + GKT+AY+ P + + P G A+++APTREL +QI + A + FG S
Sbjct: 89 CAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 38.3 bits (85), Expect = 1e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
GKT A+++P I H+ + AL+L+P RELA Q +V +F + +R+ +
Sbjct: 118 GKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAI 173
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 37.9 bits (84), Expect = 2e-04
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVR 199
S GKT A+ L + ++ P P A+ LAP+RELA+QI V +E G + V+
Sbjct: 162 SGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 36.3 bits (80), Expect = 6e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 11 RCCMNSAR---GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
R C+ A+ GKT A+ LP I + P G AL+L PTRELA QI + + G
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
Query: 182 NSSYVRNTCV 211
+ +++ +
Sbjct: 100 ANLNLKHALI 109
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.5 bits (78), Expect = 0.001
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 116 ALVLAPTRELAQQIQQVASEFGNSSYVR-NTCV 211
AL+LAPTRELAQQIQ+V G+ V + C+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACI 122
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 34.7 bits (76), Expect = 0.002
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 35 GKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 175
GKTLA+++P I ++ P R G G I +++PTRELA QI VA E
Sbjct: 138 GKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKE 183
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 34.7 bits (76), Expect = 0.002
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
GKTLA+I+P I ++ + DG ALV++PTRELA Q + + G
Sbjct: 88 GKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 34.3 bits (75), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGN 184
GKT A+I+P + + +P ++ L+L PTRELA Q VA++ +
Sbjct: 308 GKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIAS 355
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.5 bits (73), Expect = 0.004
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVR 199
GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 88 GKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 33.5 bits (73), Expect = 0.004
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 23 NSARGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 163
++ GKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 167 DTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.1 bits (72), Expect = 0.005
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVR 199
GKT A+++P++ ++ + + L+L PTRELA Q QV G V+
Sbjct: 93 GKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVK 142
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 32.3 bits (70), Expect = 0.009
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 110 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
P L+LAPTREL QI + + +F S+VR V
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAV 289
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.9 bits (69), Expect = 0.012
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 116 ALVLAPTRELAQQIQQVASEFGNSSYVR-NTCV 211
AL+L+PTRELA QIQ V G+ V+ + C+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACI 124
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.5 bits (68), Expect = 0.016
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 154
GKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 214 GKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.063
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 14 CCMNSARGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVASEF 178
C S GKT ++L + I P+ DG ++ LVL TRELA QI+ + F
Sbjct: 93 CQAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARF 142
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 0.084
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1218 GKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.084
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1218 GKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.11
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +2
Query: 17 CMNSARG--KTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 157
C+++A G KTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 177 CVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 121 SSSSNKRTCSTNTAGC 168
S SSN +TC +N GC
Sbjct: 21 SPSSNFKTCVSNENGC 36
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 44 LAYILPAIVHINNQPPIRRGDGPIALVLAPTR 139
L +++P +N PP++R G + P R
Sbjct: 189 LQHVMPNAEIFSNTPPLKRFRGDAGMTQMPLR 220
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 203 YYEHKMNCQILKQPAVFVEQV 141
YY+H ++ +LKQP FVE V
Sbjct: 351 YYDHIVSYYMLKQPD-FVEGV 370
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 132 QQENLLNKYSRLLQNLAI 185
+Q ++LN Y R+L N ++
Sbjct: 130 KQSDILNSYERVLSNASV 147
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 139 RTCSTNTAGCFRIWQFI 189
RTC + T C + W FI
Sbjct: 141 RTCCSKTNICEKCWPFI 157
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 195 T*DELPNSEATCCIC 151
T ++L NS+ TC IC
Sbjct: 281 TEEQLTNSDRTCTIC 295
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 118 ISSSSNKRTCSTNTAGCFRIWQFILCS 198
I S N+ ++ GC ++W + CS
Sbjct: 400 IESGVNRFIATSGYDGCVKLWNPLNCS 426
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 14 CCMNSARGKTLAYILPAIVHINNQ 85
C M+S GKT ++L ++ ++NQ
Sbjct: 373 CLMSSQAGKTWGFLL-NVIAVSNQ 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 858,855
Number of Sequences: 5004
Number of extensions: 12405
Number of successful extensions: 61
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -