Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L03
(211 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 73 3e-14
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 65 7e-12
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 64 1e-11
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 54 1e-08
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 49 4e-07
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 46 5e-06
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 46 5e-06
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 46 5e-06
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 43 3e-05
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 42 6e-05
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 40 3e-04
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 40 3e-04
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.001
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 38 0.001
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 38 0.001
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 37 0.002
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 37 0.002
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 37 0.002
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 37 0.002
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 37 0.002
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 37 0.002
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 37 0.002
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 37 0.002
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 37 0.002
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 36 0.003
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 36 0.005
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 35 0.007
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 34 0.016
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 34 0.016
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 34 0.016
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 33 0.021
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 33 0.028
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 33 0.028
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 32 0.064
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 31 0.11
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 31 0.11
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 30 0.20
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 30 0.20
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 30 0.20
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 29 0.34
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 28 0.79
AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical ... 28 1.0
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 27 1.4
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 27 1.4
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 27 1.4
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 27 1.4
U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon g... 26 3.2
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 26 3.2
AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein. 26 3.2
AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical ... 26 3.2
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 26 3.2
Z82278-1|CAB05253.1| 135|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 25 7.3
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 25 7.3
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 72.9 bits (171), Expect = 3e-14
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
GKTLA++LPA+VHI Q +RG+GP LVL PTRELAQQ+Q+V+ +F +S ++ TC+
Sbjct: 178 GKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCL 236
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 64.9 bits (151), Expect = 7e-12
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTC 208
GKTLA++LP HI +QP + GDGPIA++LAPTRELA Q + A++F ++ C
Sbjct: 353 GKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVAC 410
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 64.1 bits (149), Expect = 1e-11
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 178
GKT AY+ PAIVHI +QP ++ G+GP+A+++ PTRELA Q+ Q A +F
Sbjct: 314 GKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKF 361
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 54.0 bits (124), Expect = 1e-08
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVASEFGNSSYVRN 202
GKT A++LP +V I + P + R + GP A+++APTRELAQQI++ ++FG ++
Sbjct: 350 GKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKT 409
Query: 203 TCV 211
V
Sbjct: 410 VSV 412
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 49.2 bits (112), Expect = 4e-07
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQ-PPIRRGD-----GPIALVLAPTRELAQQIQQVASEFGNSSYV 196
GKTLA++LPA++HI+ Q + D P LVL+PTRELAQQI+ ++ + Y
Sbjct: 133 GKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGY- 191
Query: 197 RNTCV 211
++ C+
Sbjct: 192 KSVCL 196
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 45.6 bits (103), Expect = 5e-06
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINN------QPPI----RRGDGPIALVLAPTRELAQQIQQV 166
C + GKT A++LP I HI +PP RR P ALVL+PTRELA QI +
Sbjct: 182 CAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKE 241
Query: 167 ASEFGNSSYVR 199
A++F S ++
Sbjct: 242 ATKFSYKSNIQ 252
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 45.6 bits (103), Expect = 5e-06
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINN------QPPI----RRGDGPIALVLAPTRELAQQIQQV 166
C + GKT A++LP I HI +PP RR P ALVL+PTRELA QI +
Sbjct: 166 CAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKE 225
Query: 167 ASEFGNSSYVR 199
A++F S ++
Sbjct: 226 ATKFSYKSNIQ 236
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 45.6 bits (103), Expect = 5e-06
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINN------QPPI----RRGDGPIALVLAPTRELAQQIQQV 166
C + GKT A++LP I HI +PP RR P ALVL+PTRELA QI +
Sbjct: 163 CAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKE 222
Query: 167 ASEFGNSSYVR 199
A++F S ++
Sbjct: 223 ATKFSYKSNIQ 233
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPTRELAQQIQQ 163
++ GKT A+ LP I I + R+ DGP+AL+LAPTRELA QI +
Sbjct: 427 TSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHE 477
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +2
Query: 23 NSARGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQI 157
++ GKT+ ++LP ++ Q P R +GP L++ P+RELA+QI
Sbjct: 235 STGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQI 282
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
S GKT + + + I+++ P + ALV+APTRELAQQIQ+V S G
Sbjct: 75 SGTGKTATFSVSILQRIDHEDPHVQ-----ALVMAPTRELAQQIQKVMSALG 121
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
S GKT + + + I+++ P + ALV+APTRELAQQIQ+V S G
Sbjct: 75 SGTGKTATFSVSILQRIDHEDPHVQ-----ALVMAPTRELAQQIQKVMSALG 121
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRR-GDG---PIALVLAPTRELAQQIQQVASEF 178
C + GKT A++LP + + + + G+G P ++L PTRELA QI +F
Sbjct: 384 CAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF 441
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRR-GDG---PIALVLAPTRELAQQIQQVASEF 178
C + GKT A++LP + + + + G+G P ++L PTRELA QI +F
Sbjct: 384 CAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF 441
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRR-GDG---PIALVLAPTRELAQQIQQVASEF 178
C + GKT A++LP + + + + G+G P ++L PTRELA QI +F
Sbjct: 384 CAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKF 441
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRR-GDG---PIALVLAPTRELAQQIQQVASEF 178
C + GKT A++LP + + ++ + G+G P ++L PTREL QI +F
Sbjct: 595 CAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKF 652
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRR-GDG---PIALVLAPTRELAQQIQQVASEF 178
C + GKT A++LP + + ++ + G+G P ++L PTREL QI +F
Sbjct: 595 CAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKF 652
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRG-DG---PIALVLAPTRELAQQIQQVASEFGN 184
C + GKT A++LP + + + + G +G P ++L PTRELA QI +F
Sbjct: 341 CAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSY 400
Query: 185 SS 190
S
Sbjct: 401 QS 402
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRG-DG---PIALVLAPTRELAQQIQQVASEFGN 184
C + GKT A++LP + + + + G +G P ++L PTRELA QI +F
Sbjct: 341 CAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSY 400
Query: 185 SS 190
S
Sbjct: 401 QS 402
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
GKT A+++P + + R G AL+++PTRELA Q +V E G + +R C+
Sbjct: 73 GKTAAFVIPMLQKLKR----RDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACL 127
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV 211
GKT A+++P + + R G AL+++PTRELA Q +V E G + +R C+
Sbjct: 73 GKTAAFVIPMLQKLKR----RDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACL 127
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
C + GKTLA+ +P + ++ P G AL+L PTRELA QI + + G
Sbjct: 132 CARTGTGKTLAFAIPILQKLSVDPY-----GIYALILTPTRELAFQIAEQFTALG 181
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
C + GKTLA+ +P + ++ P G AL+L PTRELA QI + + G
Sbjct: 132 CARTGTGKTLAFAIPILQKLSVDPY-----GIYALILTPTRELAFQIAEQFTALG 181
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRR-GDG---PIALVLAPTRELAQQIQQVASEF 178
C + GKT A++LP + + ++ + G+G P ++L PTREL QI +F
Sbjct: 595 CAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKF 652
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 175
GKTLA++LPAI + ++ ++ +G ++++PTREL+ Q V SE
Sbjct: 117 GKTLAFLLPAI-ELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSE 162
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 166
C + GKT A++LP + + +P + LVL PTRELA Q+ QV
Sbjct: 191 CAATGTGKTAAFVLPILERMIYRP--KGASCTRVLVLVPTRELAIQVFQV 238
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 35.1 bits (77), Expect = 0.007
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 178
GKTLA++LP + I N G AL+L+P+REL QI V F
Sbjct: 58 GKTLAFVLPMMRMIQNAKLQPADIG--ALILSPSRELCSQIVSVIQPF 103
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 33.9 bits (74), Expect = 0.016
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVR-N 202
S GKT + + + ++ Q +R AL+L+PTRELA QIQ+V G+ V+ +
Sbjct: 72 SGTGKTATFSISVLQSLDTQ--VRETQ---ALILSPTRELAVQIQKVVLALGDYMNVQCH 126
Query: 203 TCV 211
C+
Sbjct: 127 ACI 129
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 33.9 bits (74), Expect = 0.016
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 166
GKT A+++P + + + G GP A+++APT+EL QI ++
Sbjct: 138 GKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKL 182
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 33.9 bits (74), Expect = 0.016
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVR-N 202
S GKT + + + ++ Q +R AL+L+PTRELA QIQ+V G+ V+ +
Sbjct: 72 SGTGKTATFSISVLQSLDTQ--VRETQ---ALILSPTRELAVQIQKVVLALGDYMNVQCH 126
Query: 203 TCV 211
C+
Sbjct: 127 ACI 129
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 33.5 bits (73), Expect = 0.021
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 175
GKT AY +P I I QP ++ A+V+ PTRELA Q Q+ E
Sbjct: 92 GKTGAYCIPVIEKI--QPALKAIQ---AMVIVPTRELALQTSQICVE 133
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 33.1 bits (72), Expect = 0.028
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQ 154
C ++ GKTLA+++P ++ + + R P L++APTREL Q
Sbjct: 779 CAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 33.1 bits (72), Expect = 0.028
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQ 154
C ++ GKTLA+++P ++ + + R P L++APTREL Q
Sbjct: 779 CAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 31.9 bits (69), Expect = 0.064
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHINNQPPI-----------RRGDGPIALVLAPTRELAQQIQQ 163
C + GKT A+++P + I P R+ P ALVL+PTREL+ QI
Sbjct: 209 CAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFN 268
Query: 164 VASEF 178
+ +F
Sbjct: 269 ESRKF 273
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 31.1 bits (67), Expect = 0.11
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 35 GKTLAYILPAIVHI------NNQPPIRRGDGPIALVLAPTRELAQQIQQ 163
GKTLA+ +P + + + + GP AL++APTREL QI +
Sbjct: 38 GKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMK 86
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 31.1 bits (67), Expect = 0.11
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 35 GKTLAYILPAIVHI------NNQPPIRRGDGPIALVLAPTRELAQQIQQ 163
GKTLA+ +P + + + + GP AL++APTREL QI +
Sbjct: 205 GKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMK 253
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
S GKT A++L + I+ P + LAPT ELA+QI +V + G
Sbjct: 257 SGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPTLELAKQIGEVVEKMG 303
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
S GKT A++L + I+ P + LAPT ELA+QI +V + G
Sbjct: 282 SGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPTLELAKQIGEVVEKMG 328
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 26 SARGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 181
S GKT A++L + I+ P + LAPT ELA+QI +V + G
Sbjct: 666 SGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPTLELAKQIGEVVEKMG 712
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGN 184
GKT A+ +P + + + P LVL PTRELA QI Q G+
Sbjct: 93 GKTGAFAIPVLQSLLDHP-----QAFFCLVLTPTRELAFQIGQQFEALGS 137
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.3 bits (60), Expect = 0.79
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 35 GKTLAYILPAI---VHINNQPPIRRGDGP--IALVLAPTRELAQQ 154
GKTLA+ LP I + + + + +A+VL PTRELA Q
Sbjct: 175 GKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQ 219
>AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical
protein Y38A10A.6 protein.
Length = 520
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 35 GKTLAYILPAI-VHINNQP---PIRRGDGPIALVLAPTRELAQQI 157
GKT A+++PAI + + +P I P L+LA T L +Q+
Sbjct: 141 GKTYAFLIPAIEIALRERPLLTNISTTPSPTILILANTNSLVEQL 185
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHI-NNQPPIRRGDGP 112
CM+ RG + AIVH+ Q P RRG P
Sbjct: 432 CMDGWRGNDCSVFADAIVHVPQAQSPPRRGQEP 464
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 59 PAIVHINNQPPIRRGDG---PIALVLAPTRELAQQIQQV 166
P + ++ +P + DG P A+++APT+EL QI ++
Sbjct: 77 PQVDEMDFEPEHKTNDGSVGPSAVIIAPTKELITQIYKL 115
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHI-NNQPPIRRGDGP 112
CM+ RG + AIVH+ Q P RRG P
Sbjct: 374 CMDGWRGNDCSVFADAIVHVPQAQSPPRRGQEP 406
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 CMNSARGKTLAYILPAIVHI-NNQPPIRRGDGP 112
CM+ RG + AIVH+ Q P RRG P
Sbjct: 556 CMDGWRGNDCSVFADAIVHVPQAQSPPRRGQEP 588
>U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon gene
protein 3 protein.
Length = 434
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 122 VLAPTRELAQQIQQVASEFGNSSYVRNT 205
+LA LA+ Q+ A FG++S+V+NT
Sbjct: 248 ILASRGILARFAQEYAGVFGDASFVKNT 275
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYV 196
GKT+ Y+LP + + ++P A++L P + L QI + + S V
Sbjct: 168 GKTICYVLPVLAAVGSKP----SKILQAVILVPVQTLVAQIVDEFKRWNDESGV 217
>AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein.
Length = 434
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 122 VLAPTRELAQQIQQVASEFGNSSYVRNT 205
+LA LA+ Q+ A FG++S+V+NT
Sbjct: 248 ILASRGILARFAQEYAGVFGDASFVKNT 275
>AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical
protein F32D1.3 protein.
Length = 774
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 62 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 154
AI+H+N + + + IAL+L PT ++A++
Sbjct: 729 AILHLNQKYDLALKEYEIALILDPTSDVARE 759
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 35 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 154
GKTLA ++P + + + G AL+++PTRELA Q
Sbjct: 125 GKTLALVIPVLEALW-RAKWSPDYGLGALIISPTRELALQ 163
>Z82278-1|CAB05253.1| 135|Caenorhabditis elegans Hypothetical
protein M162.1 protein.
Length = 135
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 97 PNGRLIINMYYGR*NISQSFASCRIHAA 14
P+GR I +YG N + A+C+ H A
Sbjct: 56 PHGRWCIKPFYGNTNHITAQAACQKHGA 83
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1
Query: 112 RTITTPNGRLIINMYYG 62
++ITTP+G+ +I +YG
Sbjct: 1660 KSITTPDGKNVIQQHYG 1676
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1
Query: 112 RTITTPNGRLIINMYYG 62
++ITTP+G+ +I +YG
Sbjct: 1660 KSITTPDGKNVIQQHYG 1676
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 68 LWQVKYKPKFCLVPNSCST 12
LWQVKYK +F P S ++
Sbjct: 375 LWQVKYKCEFDTPPGSTAS 393
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 68 LWQVKYKPKFCLVPNSCST 12
LWQVKYK +F P S ++
Sbjct: 420 LWQVKYKCEFDTPPGSTAS 438
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,956,991
Number of Sequences: 27780
Number of extensions: 75742
Number of successful extensions: 247
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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