Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L03
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.042
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   0.91 
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   1.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   8.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   8.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   8.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   8.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 0.042
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 17  CMNSARGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVASEFGN 184
           C  +  GKT A+ +P I  +  +            P  ++++PTREL  QI Q   +F  
Sbjct: 239 CAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSL 298

Query: 185 SSYVR 199
           +S ++
Sbjct: 299 NSILK 303


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 0.91
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 124 SSSNKRTCSTNTAGCF 171
           SSS   TCS +T  CF
Sbjct: 285 SSSASTTCSGHTVRCF 300


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 151 TNTAGCFRIWQFILC 195
           T+T GC   WQF  C
Sbjct: 120 TSTEGCEVAWQFGKC 134


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 151 TNTAGCFRIWQFILC 195
           T+T GC   WQF  C
Sbjct: 94  TSTEGCEVAWQFGKC 108


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 37  ASCRIHAAP 11
           ++CRIH +P
Sbjct: 440 SACRIHGSP 448


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 107 HHHAEWE 87
           HH AEW+
Sbjct: 514 HHDAEWK 520


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 107 HHHAEWE 87
           HH AEW+
Sbjct: 429 HHDAEWK 435


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 107 HHHAEWE 87
           HH AEW+
Sbjct: 748 HHDAEWK 754


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 115 CISSSSNKRTCSTNTAGC 168
           CI  S+ K  CS  +  C
Sbjct: 90  CIGCSAEKFECSKTSNPC 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,127
Number of Sequences: 438
Number of extensions: 1009
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)