Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K24
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 229 1e-61
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 229 1e-61
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 229 1e-61
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 63 2e-11
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 59 2e-10
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 33 0.020
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 1.8
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 2.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 4.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 4.1
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 5.4
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 7.1
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 24 7.1
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 24 7.1
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 7.1
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 24 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 229 bits (560), Expect = 1e-61
Identities = 102/125 (81%), Positives = 113/125 (90%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 370 CKFAE 384
CKFAE
Sbjct: 368 CKFAE 372
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 229 bits (560), Expect = 1e-61
Identities = 102/125 (81%), Positives = 113/125 (90%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 370 CKFAE 384
CKFAE
Sbjct: 368 CKFAE 372
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 229 bits (560), Expect = 1e-61
Identities = 102/125 (81%), Positives = 113/125 (90%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 370 CKFAE 384
CKFAE
Sbjct: 368 CKFAE 372
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.9 bits (146), Expect = 2e-11
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +1
Query: 25 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVK 201
K +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 476 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 535
Query: 202 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA 381
+++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA FA
Sbjct: 536 GDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFA 593
Query: 382 E 384
+
Sbjct: 594 K 594
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 59.3 bits (137), Expect = 2e-10
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVV--VFAPANITTEVKSVEMHHEALQEAVPGDN 183
++DV+ I G GTV GRVE G LK G + V +++ T V +EM + L AV GDN
Sbjct: 257 IEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDN 316
Query: 184 VGFNVKNVSVKELRRGYV 237
G ++++ ++L+RG +
Sbjct: 317 CGLLLRSIKREQLKRGMI 334
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 32.7 bits (71), Expect = 0.020
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = -3
Query: 221 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 42
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 41 PIPPILYTSCRP 6
+P +C P
Sbjct: 115 YVPYTSSVACFP 126
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 143 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 274
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 140 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 24
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 4.1
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 173 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 352
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 353 TQPT*PAN 376
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 264 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC 380
+GS ++S + +S + I CIG+ SPH +C
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVC 128
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 72 YPKAWYCCRFCPC*HH 119
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 301 LNHPGQISNGYTPVLDCHTAHIACK 375
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 198 DVETNIVTGYSFL*SLVVHFHGLDFSS 118
DV N VTG F S+ + H LD S
Sbjct: 57 DVTLNKVTGVDFANSIFEYVHSLDSDS 83
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 7.1
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPG------TVVVFAPA--NITTEVKSVEMHHEALQE 165
L DVY I T+P+G +LK T+++ PA N + + + A++
Sbjct: 71 LLDVYS--QIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYPPKEWARVAYEGAIKY 128
Query: 166 AVPGDN-VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 291
A G V F + E+ NN PR D+TA+
Sbjct: 129 APKGQKYVYFQMSGSDANEIAYKLAMLHHFNNKPRPTGDYTAE 171
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 237 NVTTAQFLDRYVFDVETNIVTGYS 166
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 377 NLQAMWAVWQSNTGVYPFDI 318
N + MWAVW + + FD+
Sbjct: 295 NFKIMWAVWGTMRTINSFDL 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,346
Number of Sequences: 5004
Number of extensions: 33390
Number of successful extensions: 99
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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