Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K23
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 151 2e-38
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 151 2e-38
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.15
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 0.59
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 27 0.78
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 25 1.8
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 24 5.5
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 24 5.5
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 23 7.3
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 23 7.3
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 23 7.3
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 23 7.3
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 23 7.3
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 7.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 23 9.6
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 23 9.6
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 23 9.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 9.6
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 23 9.6
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 23 9.6
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 151 bits (367), Expect = 2e-38
Identities = 64/97 (65%), Positives = 85/97 (87%)
Frame = +2
Query: 8 GGSAGAKFRISLGLPVGAVXHCADNTGAKNLYVIAVQGINGRLNRLPAAGSGDMIVATVK 187
G ++G K+R++LGLPV A+ +CADN+GAKNLY+++V G RLNRLPAA GDM++ATVK
Sbjct: 6 GAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVK 65
Query: 188 KGKPELMKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
KGKP+L KK+MPA+V+RQRK +RR+DGV++YFEDNAG
Sbjct: 66 KGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAG 102
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 151 bits (367), Expect = 2e-38
Identities = 64/97 (65%), Positives = 85/97 (87%)
Frame = +2
Query: 8 GGSAGAKFRISLGLPVGAVXHCADNTGAKNLYVIAVQGINGRLNRLPAAGSGDMIVATVK 187
G ++G K+R++LGLPV A+ +CADN+GAKNLY+++V G RLNRLPAA GDM++ATVK
Sbjct: 6 GAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVK 65
Query: 188 KGKPELMKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
KGKP+L KK+MPA+V+RQRK +RR+DGV++YFEDNAG
Sbjct: 66 KGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAG 102
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 29.1 bits (62), Expect = 0.15
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = -3
Query: 294 ALSSKYMNTPSRLLNGFRCLITTAGITFFMSSGLPFLTVATIMSPEPAAGNLFRRPLIPC 115
ALSS+Y S L +T +T +SS T +++ +P P + R P P
Sbjct: 780 ALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPATPL 839
Query: 114 TAITYRFFAPVLSAQXITAP 55
+A A +AQ IT+P
Sbjct: 840 SA------ALGSAAQSITSP 853
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.1 bits (57), Expect = 0.59
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 264 SRLLNGFRCLITTAGITFFMSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 97
+ LLN F L+ +T + S + + ++ EP ++ C ++TYR
Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 26.6 bits (56), Expect = 0.78
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 127 WSSEQVTSCWFW 162
+SS ++T CWFW
Sbjct: 365 YSSNEITHCWFW 376
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 185 KKGKPELMKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 295
KKG P + +K P+++ PF RD +FI E NA
Sbjct: 337 KKGAP-VFRKHFPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 23.8 bits (49), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 256 SKWFPLPDHHCWHYLF 209
S W LPD WH+++
Sbjct: 216 SAWRKLPDAEAWHHIW 231
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 292 IILEIYEHPVPPSKWFPLPDHHCWHYLF 209
++ EI+ HP + FPLP LF
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLF 465
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/43 (27%), Positives = 14/43 (32%)
Frame = -3
Query: 183 TVATIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQXITAP 55
T + PE G F C AI R F P + P
Sbjct: 115 TALQFLKPEQTIGGKFPYVFSECQAIHARSFIPCQDTPSVKVP 157
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 253 KWFPLPDHHC 224
KWFP HHC
Sbjct: 96 KWFPEVHHHC 105
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 259 PSKWFPLPDHHCWHYLFHEFWFAFLNC 179
P KW PL L H FW AF+ C
Sbjct: 246 PPKW-PLS----LRLLLHSFWMAFIVC 267
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 126 MVV*TGYQLLVLVT*LWPQLRK 191
M V T + + LV +WP+LRK
Sbjct: 1 MTVQTAERTITLVQAIWPKLRK 22
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 23.4 bits (48), Expect = 7.3
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 92 KNLYVIAVQGINGRLNRLPAAGSGDMIVATVKKGKPELMKKVMPAVVIRQRKPFRRRDGV 271
KN + I + I + +P+A G I+ K G + + ++P + RK + DG+
Sbjct: 55 KNAHFITLTEIQKQC--IPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGL 112
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 262 PPSKWFPLPD 233
PP KW P+PD
Sbjct: 537 PPPKWKPMPD 546
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 170 IVATVKKGKPELMKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
IV KGK L + P++ I R G +Y ED G
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDG 351
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +2
Query: 200 ELMKKVMPAVVIRQRKPFRRR 262
E+M K++PA+++ + R R
Sbjct: 335 EIMNKLLPAIIVSPKLTLRNR 355
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 244 PLPDHHCWHYLFHEFWFAFLNC 179
PLP LFHE F F+ C
Sbjct: 31 PLPVQKISMSLFHEIVFVFIAC 52
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 122 INGRLNRL-PAAGSGDMIVATVKKGKPELM 208
+N N L P SG++ +A+VKK +M
Sbjct: 2062 VNSDTNTLAPIGSSGELCIASVKKSGNTMM 2091
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 215 PFS*VLVCLS*LWPQSCHQNQQLVT 141
P+S + C+S + Q+ + +QLVT
Sbjct: 421 PYSAIFKCVSLIMQQTLREEKQLVT 445
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 149 LVTCSDDH*YLVRQSHTDFLLLY 81
++ C DH L +QS DF Y
Sbjct: 272 VIRCHSDHSSLEQQSSNDFFFKY 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,734
Number of Sequences: 5004
Number of extensions: 26248
Number of successful extensions: 83
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -