Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K23
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   165   5e-42
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    29   0.62 
U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode ast...    26   4.4  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    26   5.8  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    26   5.8  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  165 bits (401), Expect = 5e-42
 Identities = 77/97 (79%), Positives = 86/97 (88%)
 Frame = +2

Query: 8   GGSAGAKFRISLGLPVGAVXHCADNTGAKNLYVIAVQGINGRLNRLPAAGSGDMIVATVK 187
           GG++GAKFRISLGLPVGAV +CADNTGAKNL+VI+V GI GRLNRLP+AG GDM V +VK
Sbjct: 7   GGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVK 66

Query: 188 KGKPELMKKVMPAVVIRQRKPFRRRDGVFIYFEDNAG 298
           KGKPEL KKV+  VVIRQRK FRR+DG FIYFEDNAG
Sbjct: 67  KGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAG 103


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  LGLPVGAVXHC-ADNTGAKNLYVIAVQG---INGRLNRLPAAGSGDMIVATVKKGKPELM 208
           L L  G V  C +D    KN  + +  G   ++G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 209 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 292
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical
           protein C07D8.6 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 128 H*YLVRQSHTDFLLLYYLHNXSQLPLGDPARCGTSLP 18
           H Y  +  H DF   + +   S   LG P R   +LP
Sbjct: 179 HLYFPQHDHVDFCKKHNISVTSYATLGSPGRVNFTLP 215


>AC024877-13|AAF60901.2|  710|Caenorhabditis elegans Nematode
           astacin protease protein30 protein.
          Length = 710

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 210 FMSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTA 109
           F  +   F T+AT+  P P  G     P +P TA
Sbjct: 80  FTFAPFSFPTLATVAPPAPGPGGPTLEPFLPTTA 113


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -3

Query: 162 PEPAAGNLFRRP--LIPCTAITYRFFAPVLSAQXITAPTGRPSEMRNFAPAEPPS 4
           P P+A +   RP  L P + I    FAPV +      P   P  +  F PA P S
Sbjct: 286 PVPSAQDQDFRPKTLKPTSVIGSHAFAPVAAPIRPMIPVPPPVSVAPFVPAPPLS 340


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 162 PE-PAAGNLFRRPLIPCTAITYRFFAPVLSAQXITAPTGRPSEMRNFAPAE 13
           PE P A  L   PL P T       APV  AQ I  PT  P+ +   AP E
Sbjct: 261 PETPEAQKLPEEPLEPVTPEPIPE-APVPIAQYIQEPTTTPAPLEAPAPVE 310


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 162 PE-PAAGNLFRRPLIPCTAITYRFFAPVLSAQXITAPTGRPSEMRNFAPAE 13
           PE P A  L   PL P T       APV  AQ I  PT  P+ +   AP E
Sbjct: 261 PETPEAQKLPEEPLEPVTPEPIPE-APVPIAQYIQEPTTTPAPLEAPAPVE 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,808,888
Number of Sequences: 27780
Number of extensions: 163699
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)