Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K21
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   3.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   4.0  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    23   4.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.1  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    22   9.3  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    22   9.3  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    22   9.3  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 60   KLQNFQFIKTL*DEYTHIKYILSNLNK 140
            K+  +  IK L +EY +++ + S +NK
Sbjct: 929  KVHEYNVIKGLLEEYYNVEKLFSGINK 955


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 121 MYFICVYSSYNVFMNWKFCNL 59
           M+F  V+S+  VF+ +  C L
Sbjct: 1   MFFFLVFSACEVFVGFSLCTL 21


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 115 FICVYSSYNVFMNWK 71
           F+C Y +  VF+ WK
Sbjct: 396 FLCTYFAPKVFLKWK 410


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 119 VFYMCILVL*CFYELE 72
           ++Y+CILVL  +Y ++
Sbjct: 590 IYYLCILVLATYYVMK 605


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 94  KTSIHI*NTFSPILIRLI 147
           K  ++I N+F PIL++L+
Sbjct: 146 KHLVYILNSFKPILLKLV 163


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 124 RMYFICVYSSYNVFMNW 74
           R  F+C+   Y  F++W
Sbjct: 6   RQLFVCMIGIYGSFLSW 22


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 66  QNFQFIKTL*DEYTHI 113
           +NFQFI+ L D+  H+
Sbjct: 82  KNFQFIQKLIDDLLHV 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,760
Number of Sequences: 5004
Number of extensions: 12275
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)