Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K21
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...    27   2.8  
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813...    26   3.7  
10_01_0188 - 2086765-2087743,2087774-2088195                           25   8.6  
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    25   8.6  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 139 LLRLERMYFICVYSSYNVFMNWK 71
           LLRL++ YF+C  S  ++F  +K
Sbjct: 294 LLRLKQQYFLCSASLQDIFFRFK 316


>08_02_0069 -
           11880841-11880936,11881150-11881221,11881263-11881343,
           11881471-11881542,11882549-11882770,11882849-11882941,
           11883509-11883601,11884546-11884632,11884958-11884990,
           11885091-11885185,11886590-11886674,11886778-11886864,
           11887757-11887846,11887929-11888057,11888668-11888757,
           11888849-11888908,11889074-11889311,11889852-11890054
          Length = 641

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 4   RGFFFFSFAQCGKIFYFFIN--YKISNS 81
           +G F F FA   + FY+F N  Y + N+
Sbjct: 559 KGLFHFGFAHAARKFYYFSNLVYTVLNN 586


>10_01_0188 - 2086765-2087743,2087774-2088195
          Length = 466

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 2   HEVFFFFHLLNAVKSFISS*ITKFPIH-KNIIRR 100
           H+V F+ H+L   +  + + ++K+  H K+II +
Sbjct: 340 HDVHFWLHILQRFEGMVKNNLSKYGEHPKDIIEK 373


>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 10  FFFFSFAQCGKIFYFFINY 66
           FFFF F  C  I +  +NY
Sbjct: 306 FFFFFFFFCANILFHHLNY 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,919,990
Number of Sequences: 37544
Number of extensions: 51128
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)