Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K21
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    25   5.4  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    25   5.4  
Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z92830-14|CAB07352.1|  363|Caenorhabditis elegans Hypothetical p...    25   9.4  
AC024792-2|AAF60680.2|  813|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +3

Query: 6   RFFFFFICSMR*NLLFL 56
           R+FFFF+CS+  +++++
Sbjct: 146 RYFFFFLCSLSIHMMYV 162


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
          receptor, class w protein100 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 5  EVFFFFHLLNAVKSFISS*ITKFPI 79
          ++ ++FH++N V SF+S  +  F I
Sbjct: 17 DIGYYFHIINVVLSFVSVLMNTFHI 41


>Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical
           protein F11A5.5b protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 173 YLENSKDCRISLIKIGENVFYMCILV 96
           YL+ +++  + L K GEN F  C+ V
Sbjct: 193 YLKTTENTYMDLPKSGENTFITCVHV 218


>Z92830-14|CAB07352.1|  363|Caenorhabditis elegans Hypothetical
           protein F11A5.5a protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 173 YLENSKDCRISLIKIGENVFYMCILV 96
           YL+ +++  + L K GEN F  C+ V
Sbjct: 190 YLKTTENTYMDLPKSGENTFITCVHV 215


>AC024792-2|AAF60680.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48G1A.4 protein.
          Length = 813

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 108 HIKYILSNLNKTYTTVF 158
           H++ I SN N+TY+ VF
Sbjct: 646 HLRVIYSNQNETYSIVF 662


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,080,701
Number of Sequences: 27780
Number of extensions: 65311
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)