Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K20
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    23   4.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   5.3  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.0  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    22   9.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    22   9.3  

>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 144 SYQIQNYLKFLTSVC-KLIIFISL*FYTRFV 55
           +Y++QNY  FL S+  + I FI     T+++
Sbjct: 179 NYEVQNYQLFLVSIAIQFIHFILASMPTKYI 209


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 70   LYTVRERMWKRQVTLRCA 17
            +YT+R+   +RQ+ LR A
Sbjct: 1661 IYTIRQNKLRRQIVLRYA 1678


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 22  SATLPVVSTFFHEPCIK 72
           S TLPV S +F  PC K
Sbjct: 194 SHTLPVGSKYFFVPCDK 210


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 133 SKLFKISHFSL*VNNIYFF--VILYTVRERMWKRQVTL 26
           SKLF+IS + L V ++Y F   I +   +R+ + ++ L
Sbjct: 74  SKLFRISLYILGVFSLYMFRWAIAWFCEKRLSRARMNL 111


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   EARFRRSATLPVVSTFFHEPCIKSQR 81
           +A F  S ++ +++T  H P IKSQR
Sbjct: 670 DAAFVLSYSIIMLNTDQHNPNIKSQR 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,293
Number of Sequences: 5004
Number of extensions: 9310
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)