Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K20
         (184 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-3|AAA62295.1|  283|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical p...    26   3.1  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      26   4.1  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    26   4.1  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>U20861-3|AAA62295.1|  283|Caenorhabditis elegans Hypothetical
           protein C28H8.7 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 71  NHKEINIINLQTEVRNFK*F 130
           NHK I++I+++ EV N+K F
Sbjct: 188 NHKVIDLISIKEEVNNYKIF 207


>Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 126 YLKFLTSVCKLIIFISL*FYTRFVKEC 46
           ++ F+ + C + + ISL +++ F K+C
Sbjct: 62  HISFMITTCVMFLVISLVYFSIFTKKC 88


>Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 126 YLKFLTSVCKLIIFISL*FYTRFVKEC 46
           ++ F+ + C + + ISL +++ F K+C
Sbjct: 62  HISFMITTCVMFLVISLVYFSIFTKKC 88


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 88   IYFFVILYTVRERMWKRQVT 29
            IY F+   T+ ER++KRQVT
Sbjct: 1095 IYRFIAQGTMEERIYKRQVT 1114


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
            related protein 1 protein.
          Length = 1359

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 88   IYFFVILYTVRERMWKRQVT 29
            IY F+   T+ ER++KRQVT
Sbjct: 1095 IYRFIAQGTMEERIYKRQVT 1114


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  AAQRYLSFPHSFTNRV*NHKEINI 91
           A +R  +  H F NR  NH++IN+
Sbjct: 64  ALRRNSTDTHVFANRTHNHRDINV 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,672,768
Number of Sequences: 27780
Number of extensions: 50705
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)