Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K20
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   4.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   7.2  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 119 NFSLQFVS**YLFLCDFIHGS 57
           NFS+ F+   +L L  FI+ +
Sbjct: 4   NFSIMFIHSIFLILIIFIYSN 24


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 119 NFSLQFVS**YLFLCDFIHGS 57
           NFS+ F+   +L L  FI+ +
Sbjct: 4   NFSIMFIHSIFLILIIFIYSN 24


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -1

Query: 112 HFSL*VNNIYFFVILYT 62
           HF+  +  + FF++++T
Sbjct: 403 HFAAIIEWLSFFIVIFT 419


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 469

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 91 NIYFFVILYTVRERMWK 41
          N+Y    +YT++  M K
Sbjct: 40 NVYTKAYIYTIKSNMAK 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,877
Number of Sequences: 438
Number of extensions: 609
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)