Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K19
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   137   3e-33
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z93374-6|CAB07559.1|  108|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68749-4|CAA92959.2|  179|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   8.6  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  137 bits (332), Expect = 3e-33
 Identities = 73/136 (53%), Positives = 87/136 (63%), Gaps = 5/136 (3%)
 Frame = +2

Query: 23  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 202
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 203 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 382
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119

Query: 383 AYR-----RAPPAGAP 415
           AYR      A P GAP
Sbjct: 120 AYRTEKVTEAGPGGAP 135


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +2

Query: 113 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 292
           +HPD+ KIP   ++     L    Y  ++F   +  W++ NE  +   +  + P + +  
Sbjct: 78  EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134

Query: 293 TLKRSVRTETVR 328
            L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 440 VRHQPSYHEELQLVVRADKLIYLQLFV 360
           VRH+ + +EE++L   A +L ++ LFV
Sbjct: 117 VRHEEAQNEEIKLTKAAARLAHITLFV 143


>Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical
           protein T13F3.3 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 282 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 163
           +S G C    R S+ S +KYQ K     C + Y LD   C
Sbjct: 28  LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66


>Z93374-6|CAB07559.1|  108|Caenorhabditis elegans Hypothetical
           protein C06C6.8 protein.
          Length = 108

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 311 RTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADV 436
           R + V R A  RPD    T+       + PPA  P ++  +V
Sbjct: 39  RVDLVPRNAPVRPDPVKETSAQTCPTAQTPPAKTPMERSGNV 80


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LAGLMLQHEQLKIDQLIGAHHQLE 410
           LA L++ HE  +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LAGLMLQHEQLKIDQLIGAHHQLE 410
           LA L++ HE  +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 332 GAVGRPDAPARTAEDRSAYRRAPP 403
           G+V R   PAR A D   Y+ APP
Sbjct: 76  GSVFRARRPARGAYDEGDYKEAPP 99


>Z68749-4|CAA92959.2|  179|Caenorhabditis elegans Hypothetical
           protein F56H11.2 protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 133 LLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQP 11
           L+ + +FG ++ F++Y+ S   +  +DR TV     H+  P
Sbjct: 65  LVGVMIFGAVINFVNYYKSKKRQKELDRMTVESLLAHMALP 105


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 195 SLTYPLDLSDCIALITWRLGIFSRSG 118
           S  YPL L+DC  LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 287 PATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSAD 454
           PA +  +    +  + A G  D P+  A + +A        AP D  A +GP +++
Sbjct: 451 PADVATTAPETSSAQSAAGSYDVPSEPASEVTAPIVESATEAPSDSAAPIGPAASE 506


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 137 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 307
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,207,213
Number of Sequences: 27780
Number of extensions: 202087
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)