Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K18
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    29   0.19 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   0.45 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   0.45 
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   1.0  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    24   5.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   7.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   7.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    23   9.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    23   9.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    23   9.6  

>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 127 PVLFTGGALSSDGVDDFVLRRTLSPYTGGGGPE 29
           PV +  G     GVD+  LRR L    GG  PE
Sbjct: 198 PVWYLPGVAERFGVDEVTLRRALFEQMGGAYPE 230


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 12  YYGKTSSGPPPPVYGDRVLRKTKSSTPSDERAPPVN 119
           Y+  +S+ P P VY + +     S  PS  R+P V+
Sbjct: 356 YFQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVD 391


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  TSSGPPPPVYGDRVLRKTKSSTPSDERAPPV 116
           T++    PV G  V+ + KS+TP    APPV
Sbjct: 45  TTNDRSAPVVGGGVVGERKSNTPKSFAAPPV 75


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 21  KTSSGPPPPVYGDRVLRKTKSSTPSDERAPPVNNT 125
           +T+S  PP  +    L+KT  S+ +D R P V+++
Sbjct: 132 ETASQRPPIPFSSDTLKKTYLSSENDARYPSVSDS 166


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 129 GYFKGIADWSQ 161
           G+F GIADW Q
Sbjct: 184 GHFTGIADWEQ 194


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 101 EGSTCK*YGWLFQRDRRLVATESH*TENART*EFFSVSTDY 223
           +GST K    + + +RRL   ++  +E +   EF SV  DY
Sbjct: 608 KGSTSKKVAVVSENNRRLSIFDTRSSEFSEKEEFSSVFDDY 648


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 60  RVLRKTKSSTPSDERAPPVNNT 125
           R  ++++SS+ +    PPVNNT
Sbjct: 217 RSTQRSRSSSANPVTTPPVNNT 238


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 132  SHPYYLQVEPSHRTV*MISFCGELYLRTLVEEVLKMFC 19
            S  YY+      R + ++ F GEL+  +++ E +   C
Sbjct: 1134 SDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIMHEC 1171


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 237 ASNDRLSGSSPRH 275
           ++ND LS SSPRH
Sbjct: 569 SANDVLSSSSPRH 581


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 121  LFTGGALSSDGVDDFVLRRTLSPYTGGGGP 32
            L  GG+   +G  D+ L    SPY G   P
Sbjct: 1508 LVQGGSEGREGFGDYGLLGAASPYKGVQSP 1537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,412
Number of Sequences: 5004
Number of extensions: 20146
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)