Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K18
(298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 3.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 3.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 3.2
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 26 5.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 26 5.6
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 26 5.6
AC199169-2|ABO33254.1| 319|Caenorhabditis elegans Hypothetical ... 26 5.6
U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical pr... 25 7.4
U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical pr... 25 7.4
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 25 9.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 24 TSSGPPPPVYGDRVLRKTKSSTPSDERAPPVNNTGG 131
+ S PPPP G +T S P +PP GG
Sbjct: 252 SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 24 TSSGPPPPVYGDRVLRKTKSSTPSDERAPPVNNTGG 131
+ S PPPP G +T S P +PP GG
Sbjct: 273 SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 24 TSSGPPPPVYGDRVLRKTKSSTPSDERAPPVNNTGG 131
+ S PPPP G +T S P +PP GG
Sbjct: 258 SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +3
Query: 18 GKTSSGPPPPVYGDRVLRKTKSSTPSDERAPPVNNTGGY 134
G + PPPP D + P A P + GGY
Sbjct: 35 GGGDAAPPPPPPADAAPAPAPAPEPEAAPAAPAADAGGY 73
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 12 YYGKTSSGPPPPVYGDRVLRKTKSSTPSDERAPP 113
++G TSS PPPP V SS P+ PP
Sbjct: 147 HHGATSSAPPPPPPPPPV--SVPSSKPTPPPPPP 178
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 12 YYGKTSSGPPPPVYGDRVLRKTKSSTPSDERAPP 113
++G TSS PPPP V SS P+ PP
Sbjct: 147 HHGATSSAPPPPPPPPPV--SVPSSKPTPPPPPP 178
>AC199169-2|ABO33254.1| 319|Caenorhabditis elegans Hypothetical
protein F38A1.15 protein.
Length = 319
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 18 GKTSSGPPPPVYGDRVLR-KTKSSTPSDERAPPVNNT 125
G+ S P PP++GD +R T T S + N T
Sbjct: 97 GQCPSSPDPPLFGDAAVRINTTDGTTSFQTTVTDNGT 133
>U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical
protein B0222.1 protein.
Length = 285
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 24 TSSGPPPPVYGDRVLRKTKSSTPSDERAPPVNN 122
T++GPPPP + S P PP NN
Sbjct: 230 TNNGPPPPPGFQGFQQGPPPSAPVYSAPPPYNN 262
>U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical
protein D2096.6 protein.
Length = 171
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 72 KTKSSTPSDERAPPVNNTGGYFKGIADWSQRR 167
K + T SD+ V GG I W QR+
Sbjct: 138 KARKPTKSDDEEEEVGKMGGISSSINSWVQRQ 169
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 21 KTSSGPPPPVYGDRVLRKTKSSTPSDERAP 110
K + PPPP+ +++ R +S S R P
Sbjct: 204 KATDAPPPPILQNKIERVFESEPNSGYRKP 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,734,452
Number of Sequences: 27780
Number of extensions: 120413
Number of successful extensions: 359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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