Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K17
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...   105   9e-25
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    27   0.40 
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   1.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   2.8  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    24   3.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    24   3.7  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    24   3.7  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    24   4.9  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    24   4.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   4.9  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    23   6.5  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    23   6.5  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    23   6.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    23   8.5  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    23   8.5  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score =  105 bits (253), Expect = 9e-25
 Identities = 45/62 (72%), Positives = 54/62 (87%)
 Frame = +3

Query: 99  TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGIG 278
           ++ LTRIAIV+ D+C+PK+CRQEC++SCPVVR GKLCIEV P D+IA ISE LCIGCGI 
Sbjct: 2   SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGIC 61

Query: 279 VK 284
           VK
Sbjct: 62  VK 63


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 209 AQFAHTHNWATLLAFLSTSFWF 144
           A+ +HT+NWA L++  ++ FWF
Sbjct: 19  AESSHTNNWAVLIS--TSRFWF 38


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 264 QYTVLQRWSLFYHWVLLRCTVCPYAQLGNSSCIPVDI 154
           +Y +L++ S+ Y  + +  T       G SSCIPV+I
Sbjct: 49  RYELLRKSSIRYTILQIGITFIYLQNNGKSSCIPVNI 85


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 243 WSLFYHWVL-LRCTVCPYAQLGNSSCIPVDIFL 148
           W  F  W+  + CT+  Y  + +S+ I V IFL
Sbjct: 402 WRPFSFWLFSIFCTIAAYYLVSSSTKITVFIFL 434


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 75  SRKRDNEETDKLTRIAIVNADRCKPKRCRQECKK 176
           SR+    ETD+  R + +  +R    +CRQ  K+
Sbjct: 462 SRRNSKNETDEEKRKSFLERNRQAALKCRQRKKQ 495


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 138 RCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGI 275
           R + +   +E KK  PV++ GK  I   P  +   I  E  + C I
Sbjct: 757 RARNEESNEENKK--PVIKNGKAEISAEPTKEEIDIYNEKVLACSI 800


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 252 LQRWSLFYHWVLLRCTVCPYAQLGNS 175
           +  W + YH    +CTVC  A L  +
Sbjct: 507 MANWVMDYHQASDKCTVCTPASLSKN 532


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 99  FPHYLVFGTSLIKERTLAILCLR 31
           FPH LV+G S   ++T  +  LR
Sbjct: 34  FPHLLVYGPSGAGKKTRVVAILR 56


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  DNEETDKLTRIAIVNADRCKPKRCRQE 167
           +NE+ +K  +    N D C+ + C++E
Sbjct: 296 NNEQEEKQDKKQSTNRDLCRKESCKKE 322


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 216  LRCTVCPYAQLGNSSCIPVDIFLVCND 136
            LRCT+C   + G + C    +F   ND
Sbjct: 1751 LRCTLCHEIETGIADCCLDAVFNFIND 1777


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 281 YTNTAPNTQFFRDGRYFIIGCYFDAQFAHTHN 186
           +TN +P +    D R+  +   F + F   HN
Sbjct: 243 FTNGSPYSLLLSDDRWEYLASLFTSNFTAVHN 274


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +3

Query: 24  HANVGKVSPTFALLSVMSRKRDNEETDKLTRIAIVNADRCKPKRCRQECKKSCPV 188
           H  +   SP  A    MS     +  D L R+   NA++   K  +      CPV
Sbjct: 65  HNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDDCPV 119


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 216 LRCTVCPYAQLGNSSCIPVDIF 151
           L CT+  +A LG  SC+ +D F
Sbjct: 119 LACTLITHAHLGFESCV-IDYF 139


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 220 VTSMHSLPIRTTGQLFLH 167
           + S  SLP+RT+G  F H
Sbjct: 664 IPSSASLPMRTSGNRFCH 681


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 173 EELPSCAYGQTVH 211
           +E+ SCAY  T+H
Sbjct: 231 QEVSSCAYSMTIH 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,815
Number of Sequences: 5004
Number of extensions: 24590
Number of successful extensions: 69
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)