Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K16
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 179 1e-45
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 1.3
AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical ... 29 1.7
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 5.3
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 5.3
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 5.3
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 5.3
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 5.3
U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van gogh/... 27 7.0
U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van gogh/... 27 7.0
AL034488-17|CAA22459.2| 316|Caenorhabditis elegans Hypothetical... 27 9.3
AL034488-16|CAN99708.1| 317|Caenorhabditis elegans Hypothetical... 27 9.3
AF098506-1|ABN43085.1| 145|Caenorhabditis elegans Hypothetical ... 27 9.3
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 179 bits (435), Expect = 1e-45
Identities = 86/150 (57%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Frame = +2
Query: 32 KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 211
K+LK+ E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 212 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 388
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 389 DAILEDLVFPAEIVGKRIRVKLDGSQLIKV 478
DA L++LV+PAE+VG+RIRVKLDG ++ KV
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKV 156
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = -2
Query: 434 CLQSRPGIPDLPIWRHIQKSVSWN-----GAFSVCWLHVSCGWAWAGSYGH 297
CL + G W K+ +N A SV W+ +SC + WAG G+
Sbjct: 542 CLTANIGYDQGDHWSSWTKATYYNFSRFFWALSVLWIILSCHYGWAGPIGN 592
>AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical
protein Y77E11A.9 protein.
Length = 296
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 416 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 315
GIP+ + S++W+G + C+ +C AW
Sbjct: 5 GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38
>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
protein C16A3.3 protein.
Length = 1743
Score = 27.9 bits (59), Expect = 4.0
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +2
Query: 8 GRVFKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 187
G+++K S KAG TF T + V + L + L + I K + + NK+
Sbjct: 615 GKIYKGSL-CAKAGEKANVTF-TGEGKKEVYASVDDHLLSDLLDAPIGLTKRLLIENKED 672
Query: 188 IIIYVPMPKLKAFQKIQIR 244
I VPM K+ A + ++
Sbjct: 673 ISTIVPMGKMAAINRACVK 691
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 59 PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY--VPMPKLKAFQK 232
PD ++ + S+ ++ + N DL + R I KA + E+H ++ Y +P + A++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 233 IQIRLVRELEK 265
I L+K
Sbjct: 99 IGNMTASALDK 109
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 38 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 217
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 218 KAFQKIQIRLVRELEKKFSGKHVVFV 295
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 38 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 217
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 218 KAFQKIQIRLVRELEKKFSGKHVVFV 295
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 38 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 217
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 218 KAFQKIQIRLVRELEKKFSGKHVVFV 295
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 422 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 327
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 422 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 327
RP I D P+W ++ +++++ S+C +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 422 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 327
RP I D P+W ++ +++++ S+C +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 422 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 327
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform b protein.
Length = 529
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 91 SLRDRSLEGVGFYSTRFEDFRTHLE 17
S+++ + E + FY+TRF F HL+
Sbjct: 263 SIQEAATEILRFYTTRFSSFNIHLD 287
>U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform a protein.
Length = 532
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 91 SLRDRSLEGVGFYSTRFEDFRTHLE 17
S+++ + E + FY+TRF F HL+
Sbjct: 266 SIQEAATEILRFYTTRFSSFNIHLD 290
>AL034488-17|CAA22459.2| 316|Caenorhabditis elegans Hypothetical
protein Y54G11A.10b protein.
Length = 316
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 161 EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 334
E E H K ++ + +K + +L+ E+E++F + + LP PS T
Sbjct: 255 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 312
>AL034488-16|CAN99708.1| 317|Caenorhabditis elegans Hypothetical
protein Y54G11A.10a protein.
Length = 317
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 161 EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 334
E E H K ++ + +K + +L+ E+E++F + + LP PS T
Sbjct: 256 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 313
>AF098506-1|ABN43085.1| 145|Caenorhabditis elegans Hypothetical
protein H29C22.1 protein.
Length = 145
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 83 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 202
S+A ++LE N D+ E + K + E +NK+ + Y+
Sbjct: 33 SRAAIKLENNDDVPELFHENFEFKTCKEERYNKEQTVDYI 72
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 329 KTRVANKQKRPRSRTLTSVYDAILEDLVFPAE 424
K ++ K K RSR+L++V A ++L FP E
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE 630
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,263
Number of Sequences: 27780
Number of extensions: 238882
Number of successful extensions: 675
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -