Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K15
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 58 3e-10
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 46 1e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 0.18
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 27 0.41
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 0.95
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 1.7
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 2.2
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 2.9
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 3.8
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 23 5.1
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 23 6.7
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch... 23 8.9
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 23 8.9
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 23 8.9
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 23 8.9
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 23 8.9
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 57.6 bits (133), Expect = 3e-10
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 158 PIYGPFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
P+Y PFFGVMG + I+F+S GAAYGTAK+G GI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGI 40
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 45.6 bits (103), Expect = 1e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 158 PIYGPFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
PIY FFG G + ++FS LGA YGTA +G GI
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGI 40
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 0.18
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 161 LDFRPFFLNVGVFTGPKNSDDYLHTL 84
+DF P V TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 27.1 bits (57), Expect = 0.41
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 176 FGVMGAASEIIFSSLGAAYGTAKSGTGI 259
+G++G AS + F +GAA+G GT I
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSI 72
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 0.95
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 69 VVSWSECVQIVIRVFGTCKYSHIQEKWPK 155
V S V I + F + SH+QEKW K
Sbjct: 96 VFSLIAVVLITVMGFAMLRVSHLQEKWRK 124
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 1.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 173 KVHRLDFRPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTDK 54
KV +D + FL PKN +DY++ L + D+
Sbjct: 249 KVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDR 288
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 100 SSEFLGPVNTPTFKKNG 150
SS +L P +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 126 YSHIQEKWPKIQSMDLSLELWG 191
+ ++QE W K++ +DL+ L G
Sbjct: 260 HEYVQEAWYKLEPLDLTKSLEG 281
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -2
Query: 255 PVPDLAVPYAAPR-ELKMISDAAPITPKKGP 166
P+P P P + ISD P TP+K P
Sbjct: 424 PLPTTTSPKVNPEPHSESISDTRPSTPRKVP 454
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 146 FFLNVGVFTGPKNSDDY 96
F N+G+ +GPK D Y
Sbjct: 24 FLKNIGIISGPKLVDTY 40
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 132 HIQEKWPKIQSMDLSLELWGRRLRSSSA 215
HI WP+ QS D E G L + A
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVA 89
>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 22.6 bits (46), Expect = 8.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +1
Query: 151 RKSNLWTFLWSYGG 192
R++ W W+YGG
Sbjct: 47 RRNEFWETCWAYGG 60
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 162 IGFSAIFLECGSIYRSQKL**LSAHTHSTKL 70
+ F+AI + CG + R+ L+AH + +L
Sbjct: 388 VTFAAILVNCGVLSRNLSFISLAAHDTNAQL 418
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 205 HLQLPWCCIWHSQVRH 252
HL L W C+W +Q H
Sbjct: 74 HL-LKWTCVWPNQSSH 88
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 152 RPFFLNVGVFTGPKNSD 102
RPF L +G+F+ KN D
Sbjct: 62 RPFKLYLGIFSQAKNVD 78
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 155 FRPFFLNVGVFTGPKNSDDYLHTLTPRN 72
F PF L + + T P + + L + P N
Sbjct: 16 FLPFILFIYLLTRPTHKSEELRIIEPNN 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,015
Number of Sequences: 5004
Number of extensions: 25266
Number of successful extensions: 87
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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