Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K15
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 52 5e-08
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 52 6e-08
05_01_0043 - 295041-295173,296252-296537,296616-296697 52 6e-08
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 51 1e-07
01_07_0267 + 42410174-42410252,42410679-42411097 47 2e-06
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 1.6
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 2.1
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 2.1
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 26 3.6
04_03_0041 + 10046063-10046170,10046284-10046742 26 3.6
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 26 4.8
08_01_0804 - 7774631-7775152,7775985-7776083 25 6.3
04_04_0347 + 24564589-24565296 25 6.3
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 25 6.3
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741... 25 6.3
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 25 8.4
04_01_0041 - 464695-464850,467485-469029 25 8.4
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 25 8.4
02_02_0652 - 12651163-12653210,12653327-12653627 25 8.4
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 52.4 bits (120), Expect = 5e-08
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 170 PFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
PFFG +GAAS +IFS +GAAYGTAKSG G+
Sbjct: 12 PFFGFLGAASALIFSCMGAAYGTAKSGVGV 41
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 52.0 bits (119), Expect = 6e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 170 PFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
PFFG +GAAS ++FS +GAAYGTAKSG G+
Sbjct: 12 PFFGFLGAASALVFSCMGAAYGTAKSGVGV 41
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 52.0 bits (119), Expect = 6e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 170 PFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
PFFG +GAAS ++FS +GAAYGTAKSG G+
Sbjct: 13 PFFGFLGAASALVFSCMGAAYGTAKSGVGV 42
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 50.8 bits (116), Expect = 1e-07
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 170 PFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
PFFG +GAA+ ++FS +GAAYGTAKSG G+
Sbjct: 14 PFFGFLGAAAALVFSCMGAAYGTAKSGVGV 43
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +2
Query: 164 YGPFFGVMGAASEIIFSSLGAAYGTAKSGTGI 259
+ PF G +GAA ++FS +GAAYGTA+SG G+
Sbjct: 10 FAPFLGFIGAALALVFSCMGAAYGTARSGVGV 41
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -1
Query: 214 AEDDLRRRPHNSKERSIDWIFGHFS*MWEYLQVPKTLMTICTHSLHETTLA 62
AE+ LR NS E + DW+F H E++Q L SL TT A
Sbjct: 1223 AEEALRSVRTNSVEMATDWLFSHPE---EFVQEDVQLAQALALSLGNTTEA 1270
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 54 FVCAK-VVSWSECVQIVIRVFGTC 122
F+CA VV WS + + + VFGTC
Sbjct: 553 FMCANTVVLWSGPLAMTVLVFGTC 576
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 197 TPPP*LQRKVHRLDFRPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTDKYGPSFADSIEW 21
+PPP +R +HRL L ++ K + PRN S+ P F DS W
Sbjct: 11 SPPP-ARRLLHRLGSAASGLQTLAYSSKKEGGG--GDMGPRNGGSSSNRRPGFVDSSSW 66
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 158 PIY--GPFFGVMGAASEIIFSSLGAAYGTAK 244
PI+ G FG+MGA F S GA + TA+
Sbjct: 285 PIFTAGHSFGMMGAVLVSAFESTGAHFATAR 315
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 255 PVPDLAVPYAAPRELKMISDAAPITPKKGP*IG 157
P P A P A K DAA PKK P G
Sbjct: 113 PAPKAAAPKPAKDAAKPKKDAAAAKPKKAPAAG 145
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 147 WPKIQ-SMDLSLELWGRRLRSSSAPL 221
WP ++ S D LEL RRL S++ PL
Sbjct: 126 WPSVKWSSDCLLELQHRRLPSTAPPL 151
>08_01_0804 - 7774631-7775152,7775985-7776083
Length = 206
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 196 RRPHNSKERSIDWIFGHFS*MWEYLQVP--KTLMTICTH 86
R+ H + + D IFG + + +++P +TL+T+C H
Sbjct: 145 RQLHQIRYTTSDRIFGDYPLLSRKVRMPSPRTLLTVCHH 183
>04_04_0347 + 24564589-24565296
Length = 235
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 126 YSHIQEKWPKIQSMDLSLELWGRRLRSSSAPLVLHMAQPSQAP 254
Y H WP ++ S G + AP +H QP+QAP
Sbjct: 32 YPHHHAPWPA-RAQSPSAPDHGAHGHHAPAPAPVHADQPAQAP 73
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 152 RPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTD 57
+P F NV V T PK S D L +P N D
Sbjct: 526 KPLF-NVKVTTSPKKSADQLSNDSPHNVVHLD 556
>02_02_0498 -
10973243-10973345,10973850-10973882,10974104-10974166,
10975934-10976004,10976703-10976789,10976870-10976983,
10977395-10977508,10977784-10977844,10978608-10978923,
10979031-10979721,10979948-10980073,10980180-10980247,
10980314-10980449,10981109-10981238,10981266-10981382,
10981614-10981763,10982158-10982266,10982584-10982701,
10984143-10984168,10984219-10984256,10986267-10986373
Length = 925
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 167 HR-LDFRPFFLNVGVFTGPKNSDDYLHTLTP 78
HR LD + ++G GPK + LHT+TP
Sbjct: 82 HRILDIKQHLQDLGKENGPKLWEYILHTVTP 112
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Frame = -1
Query: 232 ICSTKGAEDDLRRRPHNSKER---------SIDWIFGHFS*MWEY 125
+CS K EDD+R + ++E ++ W FG F W+Y
Sbjct: 200 VCSQK-REDDIRTKALGNEEHRGQTKGIGSNVPWKFGFFQYAWQY 243
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 181 SYGGGV*DHLQLPW 222
+YG + DHLQLPW
Sbjct: 470 AYGLALDDHLQLPW 483
>03_01_0300 +
2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 45 WAIFVCAKV--VSWSECVQIVIRVFGTC 122
WA++ A V V WS + + + FGTC
Sbjct: 524 WALYSQAAVTFVFWSSPIFVAVITFGTC 551
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 181 SYGGGV*DHLQLPW 222
+YG + DHLQLPW
Sbjct: 722 AYGLALDDHLQLPW 735
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,520,735
Number of Sequences: 37544
Number of extensions: 172909
Number of successful extensions: 429
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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