Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K14
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 101 2e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 49 2e-07
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 30 0.10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 0.72
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.95
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.7
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 25 2.2
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 25 2.9
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 24 5.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 24 5.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.7
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 24 6.7
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 23 8.8
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 23 8.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 101 bits (243), Expect = 2e-23
Identities = 57/93 (61%), Positives = 63/93 (67%)
Frame = +2
Query: 47 VRDIKEKLCYVALDFEQEMATAASSSSLEKSTNSPTVKSSQSETKGSVAQRALFXSPRFX 226
VRDIKEKLCYVALDFEQE+ TAA SSSLEKS P + + A ALF P
Sbjct: 209 VRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALF-QPSAL 267
Query: 227 WVWNACGSHETTYNSIMKCDVDIRQDLYANTVL 325
+ NA G HE TYNSIMKCDVDIR+DLY N V+
Sbjct: 268 GLENA-GIHEATYNSIMKCDVDIRKDLYGNVVM 299
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 49.2 bits (112), Expect = 2e-07
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = +2
Query: 47 VRDIKEKLCYVALDFEQEMATAASSSSLEKSTNSPTVKSSQSETKGSVAQRALFXSPRFX 226
VR+IKEK CYVA DF E+ + + P ++ T+ A LF +P
Sbjct: 214 VREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLF-NPEMM 272
Query: 227 WVWNACGSHETTYNSIMKCDVDIRQDLYANTVL 325
A G H + SI+ D+D+R LY+N VL
Sbjct: 273 GS-EASGLHIQLFKSILLSDIDLRSTLYSNIVL 304
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 39.9 bits (89), Expect = 1e-04
Identities = 28/93 (30%), Positives = 45/93 (48%)
Frame = +2
Query: 47 VRDIKEKLCYVALDFEQEMATAASSSSLEKSTNSPTVKSSQSETKGSVAQRALFXSPRFX 226
VR++KEKLCYV+ D E + + ++ L ++ P + + ++ LF P
Sbjct: 209 VREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLF-QPHLV 267
Query: 227 WVWNACGSHETTYNSIMKCDVDIRQDLYANTVL 325
G E +++I DVDIR+ LY VL
Sbjct: 268 GS-EQPGLSEFIFDTIQAADVDIRKYLYRAIVL 299
Score = 37.9 bits (84), Expect = 4e-04
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 139 YELPDGQVITIGNERFRCPEGSLXQP 216
Y LPDG+VI +G+ER+ CPE L QP
Sbjct: 240 YTLPDGRVIKVGSERYECPE-CLFQP 264
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.9 bits (64), Expect = 0.10
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 245 GSHETTYNSIMKCDVDIRQDLYANTVL 325
G HE Y SI+ CD ++R L N V+
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVV 349
Score = 26.6 bits (56), Expect = 0.95
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 139 YELPDGQVITIGNERFRCPEGSLXQPSXXLGME-RVWQPRDDIQLHHEV 282
+E PDG G ERFR E L PS P+ + LH V
Sbjct: 281 FEFPDGVTHKFGQERFRISE-ILFNPSFSASRSAETTPPQGSVGLHELV 328
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 0.72
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 47 VRDIKEKLCYVALDFEQEM 103
V +IKE +CYV+ +F+++M
Sbjct: 215 VNEIKESVCYVSQNFKEDM 233
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 0.95
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 104 ATAASSSSLEKSTNSPTVKSSQSETKGS 187
+T +SSSS S++S + KSS S +K S
Sbjct: 142 STTSSSSSSSSSSSSSSSKSSSSSSKSS 169
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 1.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 56 IKEKLCYVALDFEQEMA-----TAASSSSLEKSTNSPTVKSSQ 169
+ L ++LDF+QE + + SSSL KS NS + SSQ
Sbjct: 310 VSSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSALSSQ 352
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 139 YELPDGQVITIGNERFRCPE 198
+E PDG + G ER++ PE
Sbjct: 264 FEFPDGSRMMFGAERYQIPE 283
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 266 NSIMKCDVDIRQDLYANTVL 325
N I +CDVDIR L N ++
Sbjct: 333 NCISECDVDIRASLLNNVIV 352
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 2.9
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +2
Query: 56 IKEKLCYVALDFEQEMATAASSSS--LEKSTNSPTVKSSQSETKGS-VAQRALFXSPRFX 226
IKE+ CYV D +E + L+ ++ S T S+ + +F +P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 227 WVWNACGSHETTYNSIMKCDVDIRQDLYANTVL 325
E N + +D+R+ LY N VL
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVL 332
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 169 IGNERFRCPEGSLXQPSXXLGM--ERVWQPRDDIQLHHEV 282
+ + +FRC + + P L R+W+ DD+ H++V
Sbjct: 907 VSSLQFRCKD-VVVTPKMTLATVKARIWRSGDDVVFHYDV 945
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.2 bits (50), Expect = 5.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 314 WRTSLDGCQRHTS*W 270
WR L+GCQ++ W
Sbjct: 1469 WRKRLEGCQKNVDVW 1483
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 116 SSSSLEKSTNSPTVKSSQSETKGSVAQRAL 205
SSSS+ S++SP+ SS + T S++ ++
Sbjct: 211 SSSSVVSSSSSPSSSSSSTLTSSSLSTSSI 240
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 116 SSSSLEKSTNSPTVKSSQSETKGS 187
S + +STN PT S S KG+
Sbjct: 303 SKQEMSQSTNDPTANSMSSLLKGT 326
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 298 TDVNVTLHDGVVCRLVAATRVPYPXEXRAXEES 200
+D N+ + D ++ L+ +TR YP + +S
Sbjct: 256 SDANIFITDSILSLLMCSTRSVYPWDIVITHQS 288
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 8.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 32 GIGTRVRDIKEKLCYVALDFEQEMATAASSSSLEKSTNSPTVKSS 166
G+GT + D + L ++ A ++S+S +T+ PT+ S+
Sbjct: 403 GVGTSMSDNYQLPDMSKLSLNEQPAAPSNSNSQYMNTSMPTLDST 447
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 104 ATAASSSSLEKSTNSPTVKSSQSETKGS 187
++++SSSS S++S + KSS S + S
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSS 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,032
Number of Sequences: 5004
Number of extensions: 17955
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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