Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K14
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              82   2e-18
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   8.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 81.8 bits (193), Expect = 2e-18
 Identities = 47/76 (61%), Positives = 51/76 (67%)
 Frame = +2

Query: 98  EMATAASSSSLEKSTNSPTVKSSQSETKGSVAQRALFXSPRFXWVWNACGSHETTYNSIM 277
           EMATAASSSSLEKS   P  +      +      ALF  P F  +  ACG HETTYNSIM
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALF-QPSFLGM-EACGIHETTYNSIM 58

Query: 278 KCDVDIRQDLYANTVL 325
           KCDVDIR+DLYANTVL
Sbjct: 59  KCDVDIRKDLYANTVL 74


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 26  AAGIGTRVRDIKEKLCYVALDFEQEMATAASSSSLEKSTNSPTVKSS 166
           AA + ++ R + E  C  +L      ++ ASS + ++S  SP+V  S
Sbjct: 163 AAALLSKRRSVSE--C--SLGTASSTSSTASSRNSDRSAGSPSVSES 205


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 41 CRFLQPGGS 15
          C FL PGGS
Sbjct: 68 CEFLNPGGS 76


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  CRNRHEGSRHQGETLLR 78
           C +R+E SRH+     R
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  CRNRHEGSRHQGETLLR 78
           C +R+E SRH+     R
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  CRNRHEGSRHQGETLLR 78
           C +R+E SRH+     R
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  CRNRHEGSRHQGETLLR 78
           C +R+E SRH+     R
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  CRNRHEGSRHQGETLLR 78
           C +R+E SRH+     R
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  CRNRHEGSRHQGETLLR 78
           C +R+E SRH+     R
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 28  CRNRHEGSRHQ 60
           C +R+E SRH+
Sbjct: 230 CHSRYEDSRHE 240


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 267 LYVVSWLPH 241
           LYV+SW P+
Sbjct: 282 LYVLSWTPY 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,155
Number of Sequences: 438
Number of extensions: 1216
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)