Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K13
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0187 - 5533728-5534225                                           28   2.1  
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     26   8.7  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    26   8.7  
01_03_0306 + 14875755-14876822                                         26   8.7  

>09_02_0187 - 5533728-5534225
          Length = 165

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 123 NFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTT 248
           N   KVL +C   AA   A+ VA + QEL +   S  D   T
Sbjct: 59  NVLAKVLEYCKKHAAAAAAEDVAVKDQELKSFDASFIDVDNT 100


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 338 FFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGF 240
           FF F   +FFF F+    F F F +   C S +
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFFFFDRASCVSSY 95


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 168 VTIAKPVADEKQELVAQPTSVADTK 242
           V  ++  A EKQE+V  P + +DTK
Sbjct: 363 VAASRTAAKEKQEIVEVPVASSDTK 387


>01_03_0306 + 14875755-14876822
          Length = 355

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -2

Query: 253 VSVVFVSATEVG*ATSSCFSSATGFAIVTA 164
           +SVV+  +  +G  T++C++S+TG A V +
Sbjct: 76  ISVVYGRSRVLGSITTNCYNSSTGSANVNS 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,075
Number of Sequences: 37544
Number of extensions: 103453
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)