Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K12
(328 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 194 2e-50
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 194 2e-50
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 194 2e-50
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 194 2e-50
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 7e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 103 2e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 103 2e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 97 3e-21
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 42 8e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 38 0.001
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 36 0.005
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.005
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.005
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.005
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 32 0.085
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.085
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.085
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 32 0.085
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.15
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.15
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 28 1.8
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 28 1.8
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 1.8
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 27 2.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 3.2
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 27 3.2
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 27 4.2
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 5.6
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 25 9.7
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 194 bits (472), Expect = 2e-50
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERERGITIDIALWKFETGKYYVTIIDA 326
DKLKAERERGITIDIALWKFET KYY+TIIDA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDA 92
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 194 bits (472), Expect = 2e-50
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERERGITIDIALWKFETGKYYVTIIDA 326
DKLKAERERGITIDIALWKFET KYY+TIIDA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDA 92
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 194 bits (472), Expect = 2e-50
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERERGITIDIALWKFETGKYYVTIIDA 326
DKLKAERERGITIDIALWKFET KYY+TIIDA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDA 92
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 194 bits (472), Expect = 2e-50
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAERERGITIDIALWKFETGKYYVTIIDA 326
DKLKAERERGITIDIALWKFET KYY+TIIDA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDA 92
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 7e-34
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 231 DKLKAER 251
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 103 bits (248), Expect = 2e-23
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = +3
Query: 60 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKL 239
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 240 KAERERGITIDIALWKFETGKYYVTIIDA 326
+ ERERG+T+DI FET + ++DA
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDA 255
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 103 bits (248), Expect = 2e-23
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = +3
Query: 60 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKL 239
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 240 KAERERGITIDIALWKFETGKYYVTIIDA 326
+ ERERG+T+DI FET + ++DA
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDA 273
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 97.1 bits (231), Expect = 3e-21
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = +3
Query: 54 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLD 233
G K HIN+V +GHVD+GKST G L++ G +D+RT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 234 KLKAERERGITIDIALWKFETGKYYVTIIDA 326
ERE+G T+++ FET K + TI+DA
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDA 194
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 42.3 bits (95), Expect = 8e-05
Identities = 31/83 (37%), Positives = 41/83 (49%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 255 RGITIDIALWKFETGKYYVTIID 323
RGIT+ A + + + +ID
Sbjct: 74 RGITVQSAAVNLDWKGHRINLID 96
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 255 RGITIDIALWKFETGKYYVTIID 323
RGITI A + + IID
Sbjct: 96 RGITIQSAATYVDWHGTNINIID 118
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 36.3 bits (80), Expect = 0.005
Identities = 26/83 (31%), Positives = 37/83 (44%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 255 RGITIDIALWKFETGKYYVTIID 323
RGIT+ Y + +ID
Sbjct: 86 RGITVKAQTAALRHRGYLLNLID 108
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.005
Identities = 30/89 (33%), Positives = 41/89 (46%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDK 236
++K H+N+ IGHVD GK+T T I K A G KY +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTS------------AITKI--LATSKGAKYRKYE-DIDN 89
Query: 237 LKAERERGITIDIALWKFETGKYYVTIID 323
E+ RGITI+ ++ET K + ID
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHID 118
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.005
Identities = 30/89 (33%), Positives = 41/89 (46%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDK 236
++K H+N+ IGHVD GK+T T I K A G KY +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKI--LATSKGAKYRKYE-DIDN 90
Query: 237 LKAERERGITIDIALWKFETGKYYVTIID 323
E+ RGITI+ ++ET K + ID
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHID 119
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.005
Identities = 30/89 (33%), Positives = 41/89 (46%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDK 236
++K H+N+ IGHVD GK+T T I K A G KY +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKI--LATSKGAKYRKYE-DIDN 90
Query: 237 LKAERERGITIDIALWKFETGKYYVTIID 323
E+ RGITI+ ++ET K + ID
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHID 119
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.085
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 63 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLK 242
K+++N+ IGH+D GK+T T + +A++ K+ +DK K
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAIT--------------RVQAKKGFAKHIKFD-EIDKGK 87
Query: 243 AERERGITIDIALWKFET 296
E++RGITI++A +E+
Sbjct: 88 EEKKRGITINVAHIGYES 105
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.085
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 30 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 137
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 32.3 bits (70), Expect = 0.085
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 30 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 137
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.085
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 63 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLK 242
K+++N+ IGH+D GK+T T + +A++ K+ +DK K
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAIT--------------RVQAKKGFAKHIKFD-EIDKGK 87
Query: 243 AERERGITIDIALWKFET 296
E++RGITI++A +E+
Sbjct: 88 EEKKRGITINVAHIGYES 105
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCG 146
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCG 146
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTT 122
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTT 122
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 323 VDDGDIVFAGFELPESNIDGDTTLTLGL 240
++DGDIV + F+ P I D T++L L
Sbjct: 262 IEDGDIVSSFFDRPSIRIQSDNTVSLRL 289
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 222 WVLDKLKAERERGITIDIALWKFETGKYYVTII 320
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 222 WVLDKLKAERERGITIDIALWKFETGKYYVTII 320
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 153 DERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
++R ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 153 DERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
++R ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 222 WVLDKLKAERERGITIDIALWKFETGKYYVTII 320
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 33 IRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIE--KFEKEAQEMGK 203
IR+ K+GK K+ + ++ D GKS +L + C + + +E +F+ ++GK
Sbjct: 11 IREAWKLGKNKIFLRACILYEYDQGKSVYESYLSF-CDAVGDDFMEYREFDFWYYKLGK 68
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMGK 203
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMGK 203
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMGK 203
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 27 IVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKC 143
+++R P+ ++ + + + V+G D GKST G L C
Sbjct: 155 VLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGC 192
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 254
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 103 PASPQQLVT*STNAVVSTNVPSKSS 177
P+SPQQL NA STNV + S
Sbjct: 120 PSSPQQLHLAFANATTSTNVTNAKS 144
>Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical
protein B0024.4 protein.
Length = 390
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 127 T*STNAVVSTNVPSKSSRRKPRKWVRVPSNTLGYWT 234
T N V S + S P KWV +P+N + W+
Sbjct: 278 TIGVNVVGSVPANANFSVTYPIKWVTIPTNIIQSWS 313
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHL-IYKCGG 149
++K + +++IG +SGKST + I CGG
Sbjct: 40 RKKKALKLLIIGPGESGKSTIVKQVRILHCGG 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,609,630
Number of Sequences: 27780
Number of extensions: 145352
Number of successful extensions: 512
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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