Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K11
(377 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 28 0.42
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 0.98
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.98
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 3.0
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 3.9
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 3.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 5.2
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 5.2
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 5.2
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 24 6.9
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 24 6.9
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 24 6.9
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 24 9.1
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni... 24 9.1
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 24 9.1
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 24 9.1
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 24 9.1
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 28.3 bits (60), Expect = 0.42
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 163 ASNFSMVTASTIAAAFPFASSAGLFPLFSLVAQPPIFSLIRFY 35
ASN SM++ + F S+A L+P FS + P + FY
Sbjct: 413 ASNVSMLSFLGWSLILHFGSNAPLYPYFSFSKEEPYSFKLTFY 455
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 0.98
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 132 VDAVTIEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQSGVE 302
V V E + + KL SES L KK+ ++ LK++ + +LLD I+ E
Sbjct: 555 VSKVANESISSNHEKLMESESDRLSKKWENPQLLAQLKSRFIT--GSLLDSIEGQEE 609
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 0.98
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = -2
Query: 373 SNSSANTEYDSASGA*ILTPESKFSTPDWMQSSRVEPNEVFLFLRASKTSLVRYFFNSDF 194
++SSA T +AS +TP S S W SS V+P+ +S +S+ +
Sbjct: 932 TSSSAITSSVAAS----VTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSS 987
Query: 193 DSEPWSLLKPASNFSMVTASTIAAA 119
S + S+ S + A+++ +
Sbjct: 988 TSSVATASATDSSTSSIAAASVTGS 1012
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 1.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 178 SLLKPASNFSMVTASTIAAAFPFASSAGLFPLFSLVAQPPIFS 50
SLL + FS ST +++F S G SLV+ P+ S
Sbjct: 3513 SLLSSSGGFSSSAFSTGSSSFSLTSENGSVSSSSLVSSSPVLS 3555
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 3.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 226 SLVRYFFNSDFDSEPWSLLKPASNF-SMVTASTIAAAFPFASSAGL 92
SL + +S +D+E + LK NF S + A+ A + PF+S+ L
Sbjct: 193 SLRNFTLSSSYDTE-FEKLKAGVNFDSAINATKAAISKPFSSARNL 237
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 3.9
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 228 VFEALKNKKTSFGSTLLDCIQSGVENLDSGVRIYAP---DAESYSVFAELFDP 377
+F + T F + G+EN+ SGVR P D S+ L DP
Sbjct: 496 LFRGFSSLSTRFTDRFKEAGIGGLENIISGVRNLIPFRKDGTITSIVQSLMDP 548
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 86 GKQTGGRGERKS--RSNGGRRNHREIGGW 166
G+Q RG R+ + GG RN+R G W
Sbjct: 88 GRQNNYRGGREGGYSNGGGYRNNRGFGQW 116
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.6 bits (51), Expect = 5.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 244 LRASKTSLVRYFFNSDFDSEPWSLLKPASNFSMVTASTIAAAFPFAS 104
L +SLV++ +LKP + F V A A F +AS
Sbjct: 379 LGVDPSSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFLYAS 425
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 5.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 235 SKTSLVRYFFNSDFDSEP-WSLLKPASNFSMVTASTIAAAFPFASSAGLFPLFS 77
S ++ Y + D+ + W++ P N S VT S ++ +SAG +FS
Sbjct: 491 SSPGVIYYKAHVDWSRKSEWAMALPMENESPVTISLSSSVVLVCTSAGYVRVFS 544
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 5.2
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 256 VFLFLRASKTSLVRYFF--NSDFDSEPWSLLKPASNFSMVTASTIAAAFP 113
V F+ + +R FF ++DF PW+L K + ++ S +A P
Sbjct: 437 VAAFIAFTVPIAIRVFFTKDADFRRGPWNLGKFSRPIGLLAVSFVALMIP 486
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 115 PFASSAGLFPLFSLVAQPPIFSL 47
P+ SS G F + AQPP F L
Sbjct: 211 PYLSSLGFFVVVPNYAQPPKFPL 233
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 24.2 bits (50), Expect = 6.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 205 NSDFDSEPWSLLKPASNFSMVTASTIAAAFPFASSAGLFPLFSLV 71
N + D+E SL + NF + IA ++ F SS L +V
Sbjct: 270 NKNADNEAKSLKEKLENFPVEKLRAIAESYGFKSSDSKATLIKIV 314
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 353 RVRLRVRGVDSDTRVQVLYT 294
+VRLRVRG DSD + + T
Sbjct: 529 QVRLRVRGDDSDVQTGYVLT 548
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 9.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 352 EYDSASGA*ILTPESKFSTPDWMQSSRVEPNEVFLFLRASK 230
EYD+ G +L+ S+ + RV NEV + LR K
Sbjct: 38 EYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDK 78
>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 23.8 bits (49), Expect = 9.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 262 NEVFLFLRASKTSLVRYFFNSDFDSEPWSLLKPASNFSMVTA 137
++V L+ S T L R + D + EPWS L+P + + + A
Sbjct: 5 HKVILYY-VSLTILYRVTYLFDLE-EPWSTLRPYTPYLFILA 44
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 23.8 bits (49), Expect = 9.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 117 KAAAMVDAVTIEKLEAGFSK--LQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQ 290
K MV+ T+ + A + L G +S + Y TK+++E + K + + +
Sbjct: 64 KEGFMVNFATLTGIVAQADQRLLSGVKSWFIGATYKTKDIYERMSTTKEFLSPSNMSDMS 123
Query: 291 SGVENLDSGVRIYAPDAESYSVFAELFDP 377
EN D +Y P + +V + P
Sbjct: 124 FTFENFD---LVYVPGGQDPAVLELVESP 149
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 356 HRVRLRVRGVDSDTRVQVLYT*LDAIQQGRAK 261
HR+RLR+ SD + LYT + A+ K
Sbjct: 74 HRLRLRLSRKRSDEDDKALYTYVQAVDVANPK 105
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.8 bits (49), Expect = 9.1
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 150 EKLEA--GFSKLQGSESKSLLKKYLTKEVFEALKN 248
EKLE G KL+ ++ + YLTK+VFEAL++
Sbjct: 877 EKLENIDGMEKLKVADYAN----YLTKKVFEALRS 907
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,245
Number of Sequences: 5004
Number of extensions: 27138
Number of successful extensions: 110
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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