Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K09
         (112 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   7.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    18   9.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    18   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 98  SVSGRFGFRETKLPII 51
           SVSG  G  E K P++
Sbjct: 454 SVSGEAGIEEVKSPVL 469


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 98  SVSGRFGFRETKLPII 51
           SVSG  G  E K P++
Sbjct: 454 SVSGEAGIEEVKSPVL 469


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 109 NVAPASVVDLDFVKPNCRSSKIFSALK 29
           ++  ASV D +   P   S  + SALK
Sbjct: 426 HIPHASVTDSENTVPRYLSPDVISALK 452


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 22  LNTLEQKRF*MIGSLVSRNPNLPLTLVQR 108
           LNT+E          +    N PL+++QR
Sbjct: 691 LNTMESHEVRCTAVFLLMKTNPPLSMLQR 719


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  VEYFRAEKILDDRQFGFTKSKS 86
           V+Y  ++ IL+ + FG   SK+
Sbjct: 296 VQYEGSQDILNTQSFGKVVSKN 317


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 94  SVVDLDFVKPN 62
           S+ +LDFVK N
Sbjct: 353 SIEELDFVKLN 363


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 94  SVVDLDFVKPN 62
           S+ +LDFVK N
Sbjct: 368 SIEELDFVKLN 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,044
Number of Sequences: 438
Number of extensions: 238
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)