Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K07
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    83   8e-18
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   1.2  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    24   5.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.6  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    23   8.7  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    23   8.7  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 83.4 bits (197), Expect = 8e-18
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
 Frame = +1

Query: 31  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSK-MYVVCGAI 207
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 208 RRMGESDDC 234
           R  GESDDC
Sbjct: 60  RSKGESDDC 68


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 145 RPLSRAAPMRGPSHGSDDYSPSISLGS 65
           +P  R+     PS+  +D+ PS SLGS
Sbjct: 407 QPQGRSPNEHSPSNHPEDFPPSFSLGS 433


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 141 RYHELHRCVVLRMDQTITRRAFPWAVQVNEFTSVVLHFV 25
           ++HEL+RC+V  +D        P      E  S VL ++
Sbjct: 211 KFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYI 249


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 191 WSVEPFAGWESPTTAVVRLTKKDGILAKNY 280
           W   P   + S   A+VR  K+D ++ K Y
Sbjct: 93  WYRNPRKDFPSQEAALVRKKKRDALILKKY 122


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 92  LLAEHFLGQYKSTNSPASFCILCI*AS 12
           +L EH+ G++    SP   CI+ + A+
Sbjct: 582 ILTEHYAGKWPFWMSPRQVCIIPVSAA 608


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 153 RVHVRYHELHRCVVLRMDQTI 91
           R+ +  H+L +C+ + +DQ I
Sbjct: 129 RLPINLHKLEKCLTIPLDQNI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,689
Number of Sequences: 5004
Number of extensions: 25223
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)