Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K07
         (322 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   0.92 
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   2.8  
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    23   3.7  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    22   6.5  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = -1

Query: 181  WRSQQHVR------LQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRR 38
            W + +H R      L  P+   R     GPS+ S D   S+   STS +  + R
Sbjct: 1368 WNANRHNRQSKADSLDSPKKHRRNGSCPGPSNESTDGGESMGTASTSSQTDEPR 1421



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 115  GPSHGSDDYSPSISLGSTSQRIHQRRSAFCVSKPRAEL 2
            GP+H S       S GSTS + ++    F  ++ R +L
Sbjct: 1525 GPNHSSPSNHTDDSSGSTSAKQYRDLETFQKAQLRQKL 1562


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 246 SLTTAVVGLSHPANGSTDHVHLGGVSSTSGCRVHV 142
           S TT     ++P NG+    +    +S+S C  HV
Sbjct: 137 SATTTTTTPTNPGNGNGGSNNNNNSNSSSSCNNHV 171


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = -3

Query: 203 APQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYK--STNSPASFCI 30
           +P   Y    S+   +    + I+SC +  ++ ++ R   + FLG +       P   C 
Sbjct: 492 SPTFVYQYVNSSGIALVQLMAYISSCCNPITYCFMNRRFRQAFLGVFSCYRNRMPICCCF 551

Query: 29  LC 24
            C
Sbjct: 552 CC 553


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/36 (16%), Positives = 19/36 (52%)
 Frame = -2

Query: 204 GSTDHVHLGGVSSTSGCRVHVRYHELHRCVVLRMDQ 97
           G+ DH+ +  + +   C   ++ H++ R   + +++
Sbjct: 626 GTLDHIVVETIDTAKACIEFLKQHDIGRASFIALEK 661


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,169
Number of Sequences: 2352
Number of extensions: 6866
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21613350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)