Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K07
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 312 VISFLCERALQ*FLASIPSFLVSLTTA 232
           ++++   RAL+ F+ ++   L SLT A
Sbjct: 441 IVTYFIVRALKPFIPAVTKSLASLTDA 467


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 160  GRAADSSKMYVVCGAIRRMGESD 228
            GR  +S+K YVV   +   GES+
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGESE 1204


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 158 VAGSTSAITSCTDAWSFAWI 99
           VAG   A+  C    +F+WI
Sbjct: 354 VAGVMRAVKRCNATGAFSWI 373


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 322 YLYSNKLLMRTRTSVVLSQYPVFLSEPDY 236
           YLYS+KLL+       LS    +L E D+
Sbjct: 259 YLYSHKLLLNRYYLERLSNDLPYLEEFDW 287


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 148 PRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQ 44
           P P S+  P  GP       +PS  + S +  IHQ
Sbjct: 40  PNP-SQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 185 CTWSVEPFAGW 217
           CTW+  P+ G+
Sbjct: 301 CTWAARPWQGY 311


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 185 CTWSVEPFAGW 217
           CTW+  P+ G+
Sbjct: 301 CTWAARPWQGY 311


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 185 CTWSVEPFAGW 217
           CTW+  P+ G+
Sbjct: 301 CTWAARPWQGY 311


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 28  KMQNDAGEFVDLYC 69
           K+  +AGEF +L C
Sbjct: 592 KLPMNAGEFANLQC 605



 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 170  AARPVAGSTSAITSCTDAWS 111
            AAR +  +T++IT   +AWS
Sbjct: 1466 AARFIEVATNSITLHLNAWS 1485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,474
Number of Sequences: 438
Number of extensions: 1792
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)