Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K06
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    23   5.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    23   7.1  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       22   9.4  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    22   9.4  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    22   9.4  
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    22   9.4  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    22   9.4  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 72  AASTVATLSSAPYFLHWSVSI 10
           A++ + T+ S PY ++ SVSI
Sbjct: 280 ASAVITTIQSLPYDIYASVSI 300


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 60  VATLSSAPYFLHWSVSICFN 1
           +  +S   YFLH+S S  FN
Sbjct: 616 ILQISKHEYFLHFSSSYIFN 635


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 101 EVVDVNQLMNEIEEAKT 151
           +V++VN L+   EEAKT
Sbjct: 289 DVMEVNPLLGNEEEAKT 305


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 145 SLLDFIHELIHVHYLFDALYESTTGGINSSYF 50
           SL   + +LI     FDA++   T G +  YF
Sbjct: 114 SLSPSLFQLIVNRMRFDAIHPEWTNGSDDEYF 145


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 101 EVVDVNQLMNEIEEAKT 151
           +V++VN L+   EEAKT
Sbjct: 289 DVMEVNPLLGNKEEAKT 305


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +2

Query: 38  GAEDKVATVDAAGRAFVECVKEV-----VDVNQLMNEI 136
           GAE KVA +D  G    + +K +     VD +Q M  I
Sbjct: 145 GAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENI 182


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 77  RAFVECVKEVV--DVNQLMNEIEEAKTNGA 160
           +AF  C  +    ++NQ++NE++E K   A
Sbjct: 86  KAFESCSNDEALRNLNQIVNELDEEKYKDA 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,697
Number of Sequences: 5004
Number of extensions: 5923
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)