Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K06
         (164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    28   0.89 
11_06_0068 - 19759141-19761180                                         26   4.7  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    26   4.7  
05_07_0057 - 27386081-27386164,27386317-27386379,27386584-273866...    26   4.7  
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566...    25   6.2  
02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952     25   6.2  

>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 8   QMLTDQCKKYGAEDKVATVDAAGRAFVECVKEVVD 112
           QML D       +D V T  A+G+A V  + EV+D
Sbjct: 462 QMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLD 496


>11_06_0068 - 19759141-19761180
          Length = 679

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 44  EDKVATVDAAGRAFVECVKEVVDVNQLMNEIEE 142
           ED++A ++  GR  V CV    D    M E+ E
Sbjct: 619 EDRMAILEEMGRMAVRCVSPEEDGRPTMAEVAE 651


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 127 HELIHVHYLFDALYESTTGGINSSY 53
           H L   H + D LY+  TGG  SS+
Sbjct: 364 HRLFWSHAIDDVLYKILTGGCTSSH 388


>05_07_0057 -
           27386081-27386164,27386317-27386379,27386584-27386637,
           27386768-27386881,27386965-27387192
          Length = 180

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 11  MLTDQCKKYGAEDKVATVDAAGRAFVECVKEVVDVNQLMNE 133
           M+ ++ + Y A  KV      G     C+ E+VD  +L+NE
Sbjct: 103 MVENKIELYAAYGKVMNCGGGGSCGT-CIVEIVDGKELLNE 142


>11_01_0688 -
           5667539-5667655,5667792-5667953,5668084-5668179,
           5668278-5668339,5668434-5668509,5668612-5668694,
           5668807-5669132,5669741-5669787,5669900-5670036,
           5670135-5670168
          Length = 379

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 157 AVSFSLLDFIHELIHVHYLFDALYESTTGGINSSYFVFGTIFFALVC 17
           A  F   DF++   H   + + L E T GG++ +    G I   + C
Sbjct: 235 AKKFGCTDFVNPKDHSKPVHEVLIEMTNGGLDRAVECTGNINAMISC 281


>02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952
          Length = 206

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 86  VECVKEVVDVNQLMNEIEEAKTNGAL 163
           VECV E     +L   +E AK  GAL
Sbjct: 82  VECVTEFKTEEELARVLERAKATGAL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,035
Number of Sequences: 37544
Number of extensions: 39745
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)