Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K06
         (164 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   0.77 
U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerat...    25   5.5  
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa...    25   5.5  
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as...    25   5.5  

>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 56   ATVDAAGRAFVECVKEVVDVNQLMNEIEEAK 148
            A  D++ + F+ECVK  + V++ M +++EA+
Sbjct: 1287 ALEDSSAKPFLECVKLCMPVHKYMKKLKEAQ 1317


>U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerate
           kinase protein 1 protein.
          Length = 417

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  KKYGAEDKVATVDAAGRAFVECVK 100
           KKY  EDKV+ V   G A +E ++
Sbjct: 380 KKYNTEDKVSHVSTGGGASLELLE 403


>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
           protein kinase protein.
          Length = 1425

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 68  AAGRAFVECVKEVVDVNQLMNEIEE 142
           AA R  V+CV+ ++D N  ++ +E+
Sbjct: 532 AAARGHVDCVQALLDANSPIDAVEQ 556


>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
           (death-associated protein)kinase homolog protein 1
           protein.
          Length = 1425

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 68  AAGRAFVECVKEVVDVNQLMNEIEE 142
           AA R  V+CV+ ++D N  ++ +E+
Sbjct: 532 AAARGHVDCVQALLDANSPIDAVEQ 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,660
Number of Sequences: 27780
Number of extensions: 34657
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)