Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K05
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    24   2.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    23   4.1  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    23   4.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   4.1  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    23   5.4  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    23   5.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    23   5.4  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    23   7.2  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    22   9.5  

>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 94  PRHRCVPVKSLENQA*CVYHP 156
           P H C+  KSLEN    + HP
Sbjct: 99  PAHHCIIGKSLENVQKILSHP 119


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 184 HLMLSDDVVQDGKHIKPGSQVILPEHTYAS 95
           HLM+  D   DG HIK G  +   E +Y S
Sbjct: 576 HLMIMTDQDHDGSHIK-GLIINYLESSYPS 604


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 37  LPDS*NRSQLSVKENIV*NPRHRCVPVKSLENQA 138
           LP+   R   SV  N+V NP+ +  P+K   NQA
Sbjct: 52  LPEDLERLGYSV--NVVQNPKFKSRPLKEGPNQA 83


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 125 SDFTGTHLCLGFHTIFSFTES*DRF*ESGR 36
           SDF    LC  F T+ S+T   D + +SG+
Sbjct: 896 SDFELHRLCRSFPTLQSYTLKDDPWMDSGK 925


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 91  NPRHRCVPVKSLENQA*CVYHPGPHRHLT 177
           NPR+  VP KS      C Y      HLT
Sbjct: 120 NPRYVAVPQKSTSPNQVCSYCEPLPNHLT 148


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 193 PQSHLMLSDDVVQD 152
           P+SH+ L DD+ QD
Sbjct: 509 PESHIRLPDDMQQD 522


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 36  PTRLLKSVSAFGEGKYRVKPE 98
           PT+ ++ V+   EGK RV P+
Sbjct: 470 PTKFVQKVTITKEGKKRVAPQ 490


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 48  GVG*VGIKPASIDAS 4
           GVG VGIKP +I +S
Sbjct: 654 GVGVVGIKPKNIKSS 668


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 181 LMLSDDVVQDGKHIKPGSQVILPEHTYASG 92
           ++L DDV+  G  I+     + P+H   +G
Sbjct: 120 VLLLDDVITAGTAIREAISFLEPKHVKLAG 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,713
Number of Sequences: 5004
Number of extensions: 17447
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)