Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_K05
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 33 0.041
01_07_0343 - 42866940-42867656 28 0.88
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 26 3.6
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 26 4.7
04_04_0147 - 23109072-23109372,23109638-23109752,23109885-231099... 26 4.7
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 26 4.7
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 25 6.2
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 25 8.2
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 32.7 bits (71), Expect = 0.041
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 184 HLMLSDDVVQDGKHIKPGSQVILPEHTYASGF 89
HL SD+ + GK I PGS +I + T+A GF
Sbjct: 338 HLCASDNRLVPGKPISPGSTIISDDGTFALGF 369
>01_07_0343 - 42866940-42867656
Length = 238
Score = 28.3 bits (60), Expect = 0.88
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 109 VPVKSLENQA*CVYHPGPHRHLTSGEIVVRVLSLY 213
VP SL +Q YHP PH H + +S Y
Sbjct: 196 VPHASLHDQVPSPYHPHPHHHSYNNAAYAATVSSY 230
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 191 TISPDVK*RCGPGW*TH*AWFSSDFTGTHLCLGF 90
T+SP V P H +SD +G+ +C+GF
Sbjct: 618 TLSPGVTGNSSPNGNAHKTGNASDGSGSSICIGF 651
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 181 LMLSDDVVQDGKHIKPGSQVILPEHTYASGF 89
L +DD + GK + PG+ VI +A GF
Sbjct: 21 LCAADDRIVSGKPLSPGAAVISDGGDFALGF 51
>04_04_0147 -
23109072-23109372,23109638-23109752,23109885-23109970,
23111398-23111654
Length = 252
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 148 YHPGPHRHLTSGEIVVRVL 204
+H P RH TSGE+V V+
Sbjct: 22 HHHHPERHFTSGEVVRDVI 40
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 6 RRQSTRV*SPPTRLLKSVS--AFGEGKYRVKP 95
RRQ TRV P R L++V+ G GK + P
Sbjct: 862 RRQGTRVRPPTARALEAVAFGLLGSGKRKADP 893
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 111 NTPMPRVSHDIFLHRKLR 58
+ P+PRV H +LH+K+R
Sbjct: 1138 SNPVPRVLHPDWLHKKVR 1155
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 172 SDDVVQDGKHIKPGSQVILPEHTYASGF 89
SDD + GK + PG+ V+ +A GF
Sbjct: 55 SDDRLVPGKPLSPGATVVSDGGAFALGF 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,669,685
Number of Sequences: 37544
Number of extensions: 122424
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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