Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K05
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66516-7|CAA91362.2|  494|Caenorhabditis elegans Hypothetical pr...    32   0.063
U81043-1|AAC47486.1|  494|Caenorhabditis elegans MEX-1 protein.        32   0.063
AL023828-30|CAA19470.2|  494|Caenorhabditis elegans Hypothetical...    32   0.063
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    25   7.2  

>Z66516-7|CAA91362.2|  494|Caenorhabditis elegans Hypothetical
           protein W03C9.7 protein.
          Length = 494

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 169 DDVVQDGKHIKPGSQVILPEHTYASGFTRYFPSPKAETDFRSRVGGDQTRV 17
           D ++ DG H+   S  ILP H   S  T    SP  E  +  ++ G  T +
Sbjct: 424 DTLLVDGSHLNMTSSAILPAHQIPSTTTTSTSSPVQEQPWYEKIFGKMTMI 474


>U81043-1|AAC47486.1|  494|Caenorhabditis elegans MEX-1 protein.
          Length = 494

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 169 DDVVQDGKHIKPGSQVILPEHTYASGFTRYFPSPKAETDFRSRVGGDQTRV 17
           D ++ DG H+   S  ILP H   S  T    SP  E  +  ++ G  T +
Sbjct: 424 DTLLVDGSHLNMTSSAILPAHQIPSTTTTSTSSPVQEQPWYEKIFGKMTMI 474


>AL023828-30|CAA19470.2|  494|Caenorhabditis elegans Hypothetical
           protein W03C9.7 protein.
          Length = 494

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 169 DDVVQDGKHIKPGSQVILPEHTYASGFTRYFPSPKAETDFRSRVGGDQTRV 17
           D ++ DG H+   S  ILP H   S  T    SP  E  +  ++ G  T +
Sbjct: 424 DTLLVDGSHLNMTSSAILPAHQIPSTTTTSTSSPVQEQPWYEKIFGKMTMI 474


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 108 CSGKIT*EPGLMCLPSWTTSSL 173
           CS KIT +PG  C   WT+  +
Sbjct: 331 CSKKITVKPGDTCFSIWTSQKM 352


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 136 PGSQVILPEHTYASGFTRYFPSPKAETD 53
           P +Q ++P H   S FT Y P+P    D
Sbjct: 511 PDAQKLVPPHPQMSHFTEY-PTPSTHHD 537


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 136 PGSQVILPEHTYASGFTRYFPSPKAETD 53
           P +Q ++P H   S FT Y P+P    D
Sbjct: 553 PDAQKLVPPHPQMSHFTEY-PTPSTHHD 579


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 136 PGSQVILPEHTYASGFTRYFPSPKAETD 53
           P +Q ++P H   S FT Y P+P    D
Sbjct: 553 PDAQKLVPPHPQMSHFTEY-PTPSTHHD 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,448,873
Number of Sequences: 27780
Number of extensions: 98567
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)