Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_K04
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    24   3.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   3.2  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    23   4.2  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   5.5  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    23   7.3  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    22   9.7  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    22   9.7  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/21 (28%), Positives = 17/21 (80%)
 Frame = -1

Query: 77   FEAINYVTVRTYVNRHDFSKF 15
            F A+N++ ++T ++R+D++ +
Sbjct: 1392 FYALNFLQIKTLLHRYDYADY 1412


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 101 SPLLTNGIPLKSANHFRSLTGTKKQTNVQTRKQ 199
           +P+L +   L++ NH  SL+     TNV T+ +
Sbjct: 345 NPILRSENVLQNDNHHSSLSMDNDPTNVSTKNR 377


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 24  EIMSIDICSYGYVIDGFEVAYVTL*KALYLLME 122
           EI++   C  G+++DGF    V   K   LL E
Sbjct: 74  EILNNPECKNGFILDGFPRTVVQAEKLTALLDE 106


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  IMSIDICSYGYVID 68
           I  + IC YGYV+D
Sbjct: 506 IKKVAICLYGYVLD 519


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 20  SRNHVY*HMFVRLRN*WLRSS--LCYFIK 100
           S  HVY H+FVR  + W   S    YFI+
Sbjct: 157 SNVHVYDHLFVRHWDRWNTGSRNTLYFIE 185


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  YGYVIDGFEVAYVTL*KALYLLMEFH 128
           +G  +DG  V   ++ KAL LL+E++
Sbjct: 371 HGCTLDGVSVVVDSVDKALSLLLEWN 396


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 95  IKSPLLTNGIPLKSANH 145
           +  P   NG+P++  NH
Sbjct: 82  VTGPYKVNGVPIRRVNH 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,386
Number of Sequences: 5004
Number of extensions: 12873
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)